miRNA display CGI


Results 41 - 60 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 157128 0.77 0.675073
Target:  5'- gGCGUCGggGGuCGGcggcgggcccggggcGGGCGGCGGGCc -3'
miRNA:   3'- gCGCAGCuuCU-GCU---------------UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 187022 0.77 0.680974
Target:  5'- gGCGUgGAGGAgGAGGACGA-GGACc -3'
miRNA:   3'- gCGCAgCUUCUgCUUCUGCUgCCUGc -5'
9131 5' -53.1 NC_002512.2 + 159097 0.77 0.680974
Target:  5'- uGCGcaaCGgcGACGAGGACGACGGGa- -3'
miRNA:   3'- gCGCa--GCuuCUGCUUCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 76584 0.77 0.680974
Target:  5'- gCGCGUCG-AGAUGAAcgccGGCGuCGGACGu -3'
miRNA:   3'- -GCGCAGCuUCUGCUU----CUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 122195 0.77 0.684901
Target:  5'- gGCGguggCGGAGGCGGAGauccagaaggggacgGCGACGGugGu -3'
miRNA:   3'- gCGCa---GCUUCUGCUUC---------------UGCUGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 156461 0.76 0.700537
Target:  5'- gGCGgCGggGGacuCGggGGCGGCGGGCu -3'
miRNA:   3'- gCGCaGCuuCU---GCuuCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 64 0.76 0.707336
Target:  5'- gGCGUCGGucgcgggcgcgaggAGGCGAgAGGCGGCGGGgGg -3'
miRNA:   3'- gCGCAGCU--------------UCUGCU-UCUGCUGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 229468 0.76 0.707336
Target:  5'- gGCGUCGGucgcgggcgcgaggAGGCGAgAGGCGGCGGGgGg -3'
miRNA:   3'- gCGCAGCU--------------UCUGCU-UCUGCUGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 149837 0.76 0.710241
Target:  5'- uCGCGUCGcGGACGGAGAUGG-GGAUc -3'
miRNA:   3'- -GCGCAGCuUCUGCUUCUGCUgCCUGc -5'
9131 5' -53.1 NC_002512.2 + 121375 0.76 0.719883
Target:  5'- aGgGcCGGAGAgGAGGGCGACGGcCGg -3'
miRNA:   3'- gCgCaGCUUCUgCUUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 70990 0.76 0.719883
Target:  5'- cCGCGacCGAGGACG-GGACGAaGGACGg -3'
miRNA:   3'- -GCGCa-GCUUCUGCuUCUGCUgCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 9964 0.76 0.719883
Target:  5'- gCGCGUCGAcggAGACc--GACGACGaGACGa -3'
miRNA:   3'- -GCGCAGCU---UCUGcuuCUGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 108410 0.76 0.719883
Target:  5'- gGgGggGAGGACGggGACGGCGG-CGg -3'
miRNA:   3'- gCgCagCUUCUGCuuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 212595 0.76 0.719883
Target:  5'- aCGCGaugucCGGAGACGAggaGGACGACgaGGACGc -3'
miRNA:   3'- -GCGCa----GCUUCUGCU---UCUGCUG--CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 120780 0.76 0.729455
Target:  5'- gGCGgcCGucGGCGggGGCGGCgGGACGg -3'
miRNA:   3'- gCGCa-GCuuCUGCuuCUGCUG-CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 174 0.76 0.729455
Target:  5'- gCGCGcCGGgagGGACGggGGCGAgaaggggccCGGGCGg -3'
miRNA:   3'- -GCGCaGCU---UCUGCuuCUGCU---------GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 132709 0.76 0.729455
Target:  5'- aCGUGUCGAccgucAGcACGAAGGCGAgcaGGACGc -3'
miRNA:   3'- -GCGCAGCU-----UC-UGCUUCUGCUg--CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 229577 0.76 0.729455
Target:  5'- gCGCGcCGGgagGGACGggGGCGAgaaggggccCGGGCGg -3'
miRNA:   3'- -GCGCaGCU---UCUGCuuCUGCU---------GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 101140 0.76 0.729455
Target:  5'- gCGCGUCGuAGACcuugagccaGAAGGCGGgGGACa -3'
miRNA:   3'- -GCGCAGCuUCUG---------CUUCUGCUgCCUGc -5'
9131 5' -53.1 NC_002512.2 + 11537 0.76 0.729455
Target:  5'- aCGgGaUCGAccuGGACGAGGACGAggaGGACGa -3'
miRNA:   3'- -GCgC-AGCU---UCUGCUUCUGCUg--CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.