miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9134 3' -65.1 NC_002512.2 + 33384 0.66 0.62721
Target:  5'- -gUCCCggUCGAACCCgGCGUCCg-CCAg -3'
miRNA:   3'- ggAGGG--GGCUUGGGgCGCGGGagGGU- -5'
9134 3' -65.1 NC_002512.2 + 63313 0.66 0.608652
Target:  5'- gUUCUCCCGAcACUCCcCGUUCUCCCc -3'
miRNA:   3'- gGAGGGGGCU-UGGGGcGCGGGAGGGu -5'
9134 3' -65.1 NC_002512.2 + 30356 0.66 0.636497
Target:  5'- aCUUCCCCGAACgauuCCUGuCGCCCgacgaCCUc -3'
miRNA:   3'- gGAGGGGGCUUG----GGGC-GCGGGa----GGGu -5'
9134 3' -65.1 NC_002512.2 + 79688 0.66 0.62721
Target:  5'- gCCUCCggguuCCCGGAUCCCuCuCCC-CCCAg -3'
miRNA:   3'- -GGAGG-----GGGCUUGGGGcGcGGGaGGGU- -5'
9134 3' -65.1 NC_002512.2 + 76508 0.66 0.645781
Target:  5'- aCgUCgCUCCGGACCgccagCCGcCGCCCagCCCAg -3'
miRNA:   3'- -GgAG-GGGGCUUGG-----GGC-GCGGGa-GGGU- -5'
9134 3' -65.1 NC_002512.2 + 119868 0.66 0.608652
Target:  5'- gUUCCCCuCGAugCUcaCGCGCaCCUgCCGg -3'
miRNA:   3'- gGAGGGG-GCUugGG--GCGCG-GGAgGGU- -5'
9134 3' -65.1 NC_002512.2 + 1738 0.66 0.62721
Target:  5'- gCUCCgCgUGGACCUgagcuCGCGCCCgucggcgCCCAg -3'
miRNA:   3'- gGAGG-GgGCUUGGG-----GCGCGGGa------GGGU- -5'
9134 3' -65.1 NC_002512.2 + 94762 0.66 0.62721
Target:  5'- cCCggCCCUCgGAGCgUCGCGCCgUCCgGa -3'
miRNA:   3'- -GGa-GGGGG-CUUGgGGCGCGGgAGGgU- -5'
9134 3' -65.1 NC_002512.2 + 76310 0.66 0.617927
Target:  5'- cCCUaCCCCCc--CCCCGU-CCUUCCCc -3'
miRNA:   3'- -GGA-GGGGGcuuGGGGCGcGGGAGGGu -5'
9134 3' -65.1 NC_002512.2 + 141093 0.66 0.645781
Target:  5'- gCCUUCUUCGucaaguACCCCGUcccGCCgUCCCc -3'
miRNA:   3'- -GGAGGGGGCu-----UGGGGCG---CGGgAGGGu -5'
9134 3' -65.1 NC_002512.2 + 15877 0.66 0.608652
Target:  5'- aCCUaucgCCUCCGGGCgUCGCGCCa-CCCu -3'
miRNA:   3'- -GGA----GGGGGCUUGgGGCGCGGgaGGGu -5'
9134 3' -65.1 NC_002512.2 + 97300 0.66 0.655056
Target:  5'- gUCUgCUCgCCGAACCCCuggccGCGCCCg-CCGg -3'
miRNA:   3'- -GGA-GGG-GGCUUGGGG-----CGCGGGagGGU- -5'
9134 3' -65.1 NC_002512.2 + 5356 0.66 0.608652
Target:  5'- -gUCCCCCGGGaCCUGUGgUCCUCCg- -3'
miRNA:   3'- ggAGGGGGCUUgGGGCGC-GGGAGGgu -5'
9134 3' -65.1 NC_002512.2 + 5277 0.66 0.607725
Target:  5'- cCCgagCCCggucggcaCCGcgUCCCGCGCCCUgacguaaCCCGg -3'
miRNA:   3'- -GGa--GGG--------GGCuuGGGGCGCGGGA-------GGGU- -5'
9134 3' -65.1 NC_002512.2 + 76707 0.66 0.608652
Target:  5'- cCCUCCccaccgcugCCCGccGCCCCGUaggucGCCUUUCCGg -3'
miRNA:   3'- -GGAGG---------GGGCu-UGGGGCG-----CGGGAGGGU- -5'
9134 3' -65.1 NC_002512.2 + 107134 0.66 0.636497
Target:  5'- uCCUCCggCCCGGgcGCCCCcaucaGCGCgUUUCCGc -3'
miRNA:   3'- -GGAGG--GGGCU--UGGGG-----CGCGgGAGGGU- -5'
9134 3' -65.1 NC_002512.2 + 72738 0.66 0.617927
Target:  5'- cCCggCCCgCCGcccGCCCCGgGCCCgccgccgaccCCCGa -3'
miRNA:   3'- -GGa-GGG-GGCu--UGGGGCgCGGGa---------GGGU- -5'
9134 3' -65.1 NC_002512.2 + 2983 0.66 0.608652
Target:  5'- gCCUCCUUgGc-CCCCGCgugGCCCggUCCCGg -3'
miRNA:   3'- -GGAGGGGgCuuGGGGCG---CGGG--AGGGU- -5'
9134 3' -65.1 NC_002512.2 + 118639 0.66 0.62721
Target:  5'- uCCgcgugCCgCCCGAcGCUCCggGCGCCCggccgCCCGu -3'
miRNA:   3'- -GGa----GG-GGGCU-UGGGG--CGCGGGa----GGGU- -5'
9134 3' -65.1 NC_002512.2 + 135227 0.66 0.645781
Target:  5'- --cCCCCCG-GCCCCGgGCCg-CCUc -3'
miRNA:   3'- ggaGGGGGCuUGGGGCgCGGgaGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.