Results 1 - 20 of 305 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9134 | 3' | -65.1 | NC_002512.2 | + | 73426 | 0.74 | 0.228102 |
Target: 5'- gCCgCCCCCGAGucCCCCGCcgcccccggaGCCC-CCCAg -3' miRNA: 3'- -GGaGGGGGCUU--GGGGCG----------CGGGaGGGU- -5' |
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9134 | 3' | -65.1 | NC_002512.2 | + | 63430 | 0.75 | 0.208667 |
Target: 5'- cCCgCCCUCGAGCCCgGCGCCgUCgCCc -3' miRNA: 3'- -GGaGGGGGCUUGGGgCGCGGgAG-GGu -5' |
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9134 | 3' | -65.1 | NC_002512.2 | + | 289 | 0.75 | 0.213387 |
Target: 5'- cUCUCCgCCCGGGCCCCuucuCGCCCccgUCCCu -3' miRNA: 3'- -GGAGG-GGGCUUGGGGc---GCGGG---AGGGu -5' |
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9134 | 3' | -65.1 | NC_002512.2 | + | 229692 | 0.75 | 0.213387 |
Target: 5'- cUCUCCgCCCGGGCCCCuucuCGCCCccgUCCCu -3' miRNA: 3'- -GGAGG-GGGCUUGGGGc---GCGGG---AGGGu -5' |
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9134 | 3' | -65.1 | NC_002512.2 | + | 118521 | 0.75 | 0.218199 |
Target: 5'- gUCUUCCUCGAGCCCCGgGUCgUCCUc -3' miRNA: 3'- -GGAGGGGGCUUGGGGCgCGGgAGGGu -5' |
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9134 | 3' | -65.1 | NC_002512.2 | + | 124910 | 0.75 | 0.218199 |
Target: 5'- aCCUCCCCuaccucgaggCGGACCCgGCGUcgaUCUCCCGa -3' miRNA: 3'- -GGAGGGG----------GCUUGGGgCGCG---GGAGGGU- -5' |
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9134 | 3' | -65.1 | NC_002512.2 | + | 1471 | 0.75 | 0.218199 |
Target: 5'- cCCgCCCCCGccCCCCaGCGCCCcgUCCCc -3' miRNA: 3'- -GGaGGGGGCuuGGGG-CGCGGG--AGGGu -5' |
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9134 | 3' | -65.1 | NC_002512.2 | + | 80448 | 0.74 | 0.223104 |
Target: 5'- cCCUUCCUCuccCCCCGCGCCCgccCCCGc -3' miRNA: 3'- -GGAGGGGGcuuGGGGCGCGGGa--GGGU- -5' |
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9134 | 3' | -65.1 | NC_002512.2 | + | 25061 | 0.74 | 0.226593 |
Target: 5'- uCCUCCCggaCgGAGCCgCCGCGCCCccgggacgcggaccUCCCGg -3' miRNA: 3'- -GGAGGG---GgCUUGG-GGCGCGGG--------------AGGGU- -5' |
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9134 | 3' | -65.1 | NC_002512.2 | + | 74805 | 0.75 | 0.205878 |
Target: 5'- -aUCCCCCGGaccccgaacgucacgACCCCGCGCgcgaacggagaCCUCCCc -3' miRNA: 3'- ggAGGGGGCU---------------UGGGGCGCG-----------GGAGGGu -5' |
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9134 | 3' | -65.1 | NC_002512.2 | + | 136134 | 0.75 | 0.199495 |
Target: 5'- cCCUCCCuCCGAGCCCUcCGUCCccgUCCCc -3' miRNA: 3'- -GGAGGG-GGCUUGGGGcGCGGG---AGGGu -5' |
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9134 | 3' | -65.1 | NC_002512.2 | + | 154102 | 0.76 | 0.170117 |
Target: 5'- gCUCCCCCGcucuGCCCCGU--CCUCCCGg -3' miRNA: 3'- gGAGGGGGCu---UGGGGCGcgGGAGGGU- -5' |
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9134 | 3' | -65.1 | NC_002512.2 | + | 38591 | 0.82 | 0.068957 |
Target: 5'- cCCggCCCCCGucccccGCCCCGcCGCCCUCCCc -3' miRNA: 3'- -GGa-GGGGGCu-----UGGGGC-GCGGGAGGGu -5' |
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9134 | 3' | -65.1 | NC_002512.2 | + | 25113 | 0.8 | 0.103936 |
Target: 5'- cCUUCCCCCGGucguCCCCGCGCCCcaggCCgGg -3' miRNA: 3'- -GGAGGGGGCUu---GGGGCGCGGGa---GGgU- -5' |
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9134 | 3' | -65.1 | NC_002512.2 | + | 2514 | 0.79 | 0.109014 |
Target: 5'- aUCUCCCCCGAcgccggcgGCCCCGgGCCUccuccgUCCCGu -3' miRNA: 3'- -GGAGGGGGCU--------UGGGGCgCGGG------AGGGU- -5' |
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9134 | 3' | -65.1 | NC_002512.2 | + | 8608 | 0.79 | 0.117068 |
Target: 5'- gCCUCCCCCcccuccacgcGCCCCGCGUCC-CCCGa -3' miRNA: 3'- -GGAGGGGGcu--------UGGGGCGCGGGaGGGU- -5' |
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9134 | 3' | -65.1 | NC_002512.2 | + | 133275 | 0.79 | 0.119874 |
Target: 5'- cCCUCCCCCGcguCUCCGCGCuCCggucCCCAg -3' miRNA: 3'- -GGAGGGGGCuu-GGGGCGCG-GGa---GGGU- -5' |
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9134 | 3' | -65.1 | NC_002512.2 | + | 125262 | 0.78 | 0.134865 |
Target: 5'- cCCUCCCCCucucCCCCGUcCCCUCCCc -3' miRNA: 3'- -GGAGGGGGcuu-GGGGCGcGGGAGGGu -5' |
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9134 | 3' | -65.1 | NC_002512.2 | + | 3518 | 0.77 | 0.151563 |
Target: 5'- cCCUCCaCCCGAGCCCgCgGgGCCCgaagCCCGg -3' miRNA: 3'- -GGAGG-GGGCUUGGG-G-CgCGGGa---GGGU- -5' |
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9134 | 3' | -65.1 | NC_002512.2 | + | 73363 | 0.77 | 0.158753 |
Target: 5'- cCCgCCgCCGGAcCCCCGCGCCCcgccgCCCAg -3' miRNA: 3'- -GGaGGgGGCUU-GGGGCGCGGGa----GGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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