miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9134 3' -65.1 NC_002512.2 + 93904 1.09 0.000861
Target:  5'- cCCUCCCCCGAACCCCGCGCCCUCCCAg -3'
miRNA:   3'- -GGAGGGGGCUUGGGGCGCGGGAGGGU- -5'
9134 3' -65.1 NC_002512.2 + 3296 0.84 0.050159
Target:  5'- uCCUCCCCCGGGCC--GCGCCCUCCUg -3'
miRNA:   3'- -GGAGGGGGCUUGGggCGCGGGAGGGu -5'
9134 3' -65.1 NC_002512.2 + 98852 0.84 0.055338
Target:  5'- uCCUCCCCCGcGGCCCCGaCGCCCUCg-- -3'
miRNA:   3'- -GGAGGGGGC-UUGGGGC-GCGGGAGggu -5'
9134 3' -65.1 NC_002512.2 + 38591 0.82 0.068957
Target:  5'- cCCggCCCCCGucccccGCCCCGcCGCCCUCCCc -3'
miRNA:   3'- -GGa-GGGGGCu-----UGGGGC-GCGGGAGGGu -5'
9134 3' -65.1 NC_002512.2 + 222606 0.81 0.087865
Target:  5'- uCCggCCCCCgGGGCCUCGCGCCCgaUCCCGa -3'
miRNA:   3'- -GGa-GGGGG-CUUGGGGCGCGGG--AGGGU- -5'
9134 3' -65.1 NC_002512.2 + 121490 0.8 0.101481
Target:  5'- uCCUCCCCCccacccaccgGGcucGCCCCcCGCCCUCCCGa -3'
miRNA:   3'- -GGAGGGGG----------CU---UGGGGcGCGGGAGGGU- -5'
9134 3' -65.1 NC_002512.2 + 25113 0.8 0.103936
Target:  5'- cCUUCCCCCGGucguCCCCGCGCCCcaggCCgGg -3'
miRNA:   3'- -GGAGGGGGCUu---GGGGCGCGGGa---GGgU- -5'
9134 3' -65.1 NC_002512.2 + 2514 0.79 0.109014
Target:  5'- aUCUCCCCCGAcgccggcgGCCCCGgGCCUccuccgUCCCGu -3'
miRNA:   3'- -GGAGGGGGCU--------UGGGGCgCGGG------AGGGU- -5'
9134 3' -65.1 NC_002512.2 + 8608 0.79 0.117068
Target:  5'- gCCUCCCCCcccuccacgcGCCCCGCGUCC-CCCGa -3'
miRNA:   3'- -GGAGGGGGcu--------UGGGGCGCGGGaGGGU- -5'
9134 3' -65.1 NC_002512.2 + 133275 0.79 0.119874
Target:  5'- cCCUCCCCCGcguCUCCGCGCuCCggucCCCAg -3'
miRNA:   3'- -GGAGGGGGCuu-GGGGCGCG-GGa---GGGU- -5'
9134 3' -65.1 NC_002512.2 + 212017 0.78 0.125675
Target:  5'- aCgUCCCCCGGGCCCUGCGCgagcaCCgcgCCCGg -3'
miRNA:   3'- -GgAGGGGGCUUGGGGCGCG-----GGa--GGGU- -5'
9134 3' -65.1 NC_002512.2 + 88887 0.78 0.131735
Target:  5'- uCCUCCCCgCGcucccCCCCGUGCCC-CCCGa -3'
miRNA:   3'- -GGAGGGG-GCuu---GGGGCGCGGGaGGGU- -5'
9134 3' -65.1 NC_002512.2 + 125262 0.78 0.134865
Target:  5'- cCCUCCCCCucucCCCCGUcCCCUCCCc -3'
miRNA:   3'- -GGAGGGGGcuu-GGGGCGcGGGAGGGu -5'
9134 3' -65.1 NC_002512.2 + 3518 0.77 0.151563
Target:  5'- cCCUCCaCCCGAGCCCgCgGgGCCCgaagCCCGg -3'
miRNA:   3'- -GGAGG-GGGCUUGGG-G-CgCGGGa---GGGU- -5'
9134 3' -65.1 NC_002512.2 + 149170 0.77 0.15512
Target:  5'- gCCgCCCgCGGGCCCgCGCGCCCUCgCCc -3'
miRNA:   3'- -GGaGGGgGCUUGGG-GCGCGGGAG-GGu -5'
9134 3' -65.1 NC_002512.2 + 73363 0.77 0.158753
Target:  5'- cCCgCCgCCGGAcCCCCGCGCCCcgccgCCCAg -3'
miRNA:   3'- -GGaGGgGGCUU-GGGGCGCGGGa----GGGU- -5'
9134 3' -65.1 NC_002512.2 + 154102 0.76 0.170117
Target:  5'- gCUCCCCCGcucuGCCCCGU--CCUCCCGg -3'
miRNA:   3'- gGAGGGGGCu---UGGGGCGcgGGAGGGU- -5'
9134 3' -65.1 NC_002512.2 + 108021 0.76 0.180961
Target:  5'- aCCUCCCCCucGGAuccgccgccguccuCCCCGcCGUCCUCCCc -3'
miRNA:   3'- -GGAGGGGG--CUU--------------GGGGC-GCGGGAGGGu -5'
9134 3' -65.1 NC_002512.2 + 136134 0.75 0.199495
Target:  5'- cCCUCCCuCCGAGCCCUcCGUCCccgUCCCc -3'
miRNA:   3'- -GGAGGG-GGCUUGGGGcGCGGG---AGGGu -5'
9134 3' -65.1 NC_002512.2 + 222444 0.75 0.199495
Target:  5'- gCUUCCCCCGGgccgcggccaACCUCGCGCCggCCCu -3'
miRNA:   3'- -GGAGGGGGCU----------UGGGGCGCGGgaGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.