miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9134 5' -52.3 NC_002512.2 + 93939 1.15 0.004293
Target:  5'- cCCUCAGCACACGCGGAAGAAGAUGCCg -3'
miRNA:   3'- -GGAGUCGUGUGCGCCUUCUUCUACGG- -5'
9134 5' -52.3 NC_002512.2 + 71745 0.78 0.59737
Target:  5'- gCUCAgGUAguCGCGGAGgccGAAGAUGCCg -3'
miRNA:   3'- gGAGU-CGUguGCGCCUU---CUUCUACGG- -5'
9134 5' -52.3 NC_002512.2 + 87735 0.78 0.60749
Target:  5'- cUCUCGGaCGCgACGCGGggGGAGGgaaucaGCCg -3'
miRNA:   3'- -GGAGUC-GUG-UGCGCCuuCUUCUa-----CGG- -5'
9134 5' -52.3 NC_002512.2 + 182943 0.77 0.648078
Target:  5'- aCUCcgGGCGCACGgGGAuc-AGAUGCCa -3'
miRNA:   3'- gGAG--UCGUGUGCgCCUucuUCUACGG- -5'
9134 5' -52.3 NC_002512.2 + 10440 0.77 0.658213
Target:  5'- gCCgUCgGGCACggggGCGCGGAGGAGGccGCCg -3'
miRNA:   3'- -GG-AG-UCGUG----UGCGCCUUCUUCuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 211373 0.77 0.658213
Target:  5'- cCCggcgCGGCAUGCuGCGGAAGAAGAgGCg -3'
miRNA:   3'- -GGa---GUCGUGUG-CGCCUUCUUCUaCGg -5'
9134 5' -52.3 NC_002512.2 + 8766 0.77 0.668328
Target:  5'- uCCUCAGCGC-CGuCGGAagcucccgAGGAGgcGCCg -3'
miRNA:   3'- -GGAGUCGUGuGC-GCCU--------UCUUCuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 202668 0.77 0.668328
Target:  5'- cCCUCAGgGCACgGCGGcgacuGAAGAguuUGCCa -3'
miRNA:   3'- -GGAGUCgUGUG-CGCCuu---CUUCU---ACGG- -5'
9134 5' -52.3 NC_002512.2 + 50044 0.77 0.678413
Target:  5'- ----cGCACACGCGGggGcuGGUGCUg -3'
miRNA:   3'- ggaguCGUGUGCGCCuuCuuCUACGG- -5'
9134 5' -52.3 NC_002512.2 + 221275 0.76 0.698464
Target:  5'- aCgCGGgGCGCGUGGAGGggGGggagGCCg -3'
miRNA:   3'- gGaGUCgUGUGCGCCUUCuuCUa---CGG- -5'
9134 5' -52.3 NC_002512.2 + 134020 0.76 0.737837
Target:  5'- uCCUCGGC--GCGCGGcccuGGGAGGAcGCCg -3'
miRNA:   3'- -GGAGUCGugUGCGCC----UUCUUCUaCGG- -5'
9134 5' -52.3 NC_002512.2 + 102492 0.75 0.757017
Target:  5'- cCCUCGGCgucguucccGC-CGCGGGAGucGcgGCCg -3'
miRNA:   3'- -GGAGUCG---------UGuGCGCCUUCuuCuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 113500 0.74 0.794001
Target:  5'- -gUCcGCGCugGCGGAAGAAGuUGUUg -3'
miRNA:   3'- ggAGuCGUGugCGCCUUCUUCuACGG- -5'
9134 5' -52.3 NC_002512.2 + 192603 0.74 0.794001
Target:  5'- gCUgCGGCGCGCGCGGcGGGcgacGGcgGCCu -3'
miRNA:   3'- gGA-GUCGUGUGCGCCuUCU----UCuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 219931 0.74 0.802909
Target:  5'- gUCUCcGUcgACGCGCGGggGAGGGUGg- -3'
miRNA:   3'- -GGAGuCG--UGUGCGCCuuCUUCUACgg -5'
9134 5' -52.3 NC_002512.2 + 28279 0.74 0.811666
Target:  5'- gCUCGGCGCugGCGG-AGAAcuucauccgcucGGUGUCc -3'
miRNA:   3'- gGAGUCGUGugCGCCuUCUU------------CUACGG- -5'
9134 5' -52.3 NC_002512.2 + 158476 0.74 0.811666
Target:  5'- gCCUCAGCACGaucucCGCGGggGcgcAGGAcuuccgcgGCCu -3'
miRNA:   3'- -GGAGUCGUGU-----GCGCCuuC---UUCUa-------CGG- -5'
9134 5' -52.3 NC_002512.2 + 35449 0.73 0.836941
Target:  5'- aCUUCuGCACGCagaGGggGAAGAUGgCg -3'
miRNA:   3'- -GGAGuCGUGUGcg-CCuuCUUCUACgG- -5'
9134 5' -52.3 NC_002512.2 + 131036 0.73 0.84501
Target:  5'- gCgUCGGgGC-CGCGGggGAGGAcggcGCCg -3'
miRNA:   3'- -GgAGUCgUGuGCGCCuuCUUCUa---CGG- -5'
9134 5' -52.3 NC_002512.2 + 139274 0.73 0.84501
Target:  5'- gCC-CGGCGCGCGgGGgcGAAGGggggcGCCc -3'
miRNA:   3'- -GGaGUCGUGUGCgCCuuCUUCUa----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.