miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9134 5' -52.3 NC_002512.2 + 86442 0.71 0.914302
Target:  5'- aCggGGCGCGgGaCGGggGAcGGGUGCCg -3'
miRNA:   3'- gGagUCGUGUgC-GCCuuCU-UCUACGG- -5'
9134 5' -52.3 NC_002512.2 + 119880 0.73 0.875319
Target:  5'- gCUCAcGCGCACcugcCGGAAGAacGGGUGCa -3'
miRNA:   3'- gGAGU-CGUGUGc---GCCUUCU--UCUACGg -5'
9134 5' -52.3 NC_002512.2 + 5551 0.72 0.891886
Target:  5'- cCCggcgCGGCGC-CGCGGAaaaacAGAcgacgacacgagguaAGGUGCCg -3'
miRNA:   3'- -GGa---GUCGUGuGCGCCU-----UCU---------------UCUACGG- -5'
9134 5' -52.3 NC_002512.2 + 5904 0.72 0.895827
Target:  5'- aCggCGGgGCGCGCGGggGAuacgGCCa -3'
miRNA:   3'- gGa-GUCgUGUGCGCCuuCUucuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 121899 0.72 0.902216
Target:  5'- gCUCGGCgACGCGCGGGGagcgagcgggacGAGGcgGCg -3'
miRNA:   3'- gGAGUCG-UGUGCGCCUU------------CUUCuaCGg -5'
9134 5' -52.3 NC_002512.2 + 82966 0.72 0.908375
Target:  5'- gUCgCGGCGCacgGCGCGGAAGAcGucgGCCg -3'
miRNA:   3'- -GGaGUCGUG---UGCGCCUUCUuCua-CGG- -5'
9134 5' -52.3 NC_002512.2 + 84249 0.72 0.908375
Target:  5'- gCC-CGGCAUcucgACGCGGAAGgcGGgcagcggGCCg -3'
miRNA:   3'- -GGaGUCGUG----UGCGCCUUCuuCUa------CGG- -5'
9134 5' -52.3 NC_002512.2 + 57317 0.71 0.91372
Target:  5'- aCUC-GCGgGCGCGGAGGAacgucacgcagggGGAgcugGCCu -3'
miRNA:   3'- gGAGuCGUgUGCGCCUUCU-------------UCUa---CGG- -5'
9134 5' -52.3 NC_002512.2 + 83555 0.71 0.914302
Target:  5'- -aUgAGCgGCAUGCGGAcGGAGcgGCCg -3'
miRNA:   3'- ggAgUCG-UGUGCGCCUuCUUCuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 131036 0.73 0.84501
Target:  5'- gCgUCGGgGC-CGCGGggGAGGAcggcGCCg -3'
miRNA:   3'- -GgAGUCgUGuGCGCCuuCUUCUa---CGG- -5'
9134 5' -52.3 NC_002512.2 + 139274 0.73 0.84501
Target:  5'- gCC-CGGCGCGCGgGGgcGAAGGggggcGCCc -3'
miRNA:   3'- -GGaGUCGUGUGCgCCuuCUUCUa----CGG- -5'
9134 5' -52.3 NC_002512.2 + 35449 0.73 0.836941
Target:  5'- aCUUCuGCACGCagaGGggGAAGAUGgCg -3'
miRNA:   3'- -GGAGuCGUGUGcg-CCuuCUUCUACgG- -5'
9134 5' -52.3 NC_002512.2 + 182943 0.77 0.648078
Target:  5'- aCUCcgGGCGCACGgGGAuc-AGAUGCCa -3'
miRNA:   3'- gGAG--UCGUGUGCgCCUucuUCUACGG- -5'
9134 5' -52.3 NC_002512.2 + 10440 0.77 0.658213
Target:  5'- gCCgUCgGGCACggggGCGCGGAGGAGGccGCCg -3'
miRNA:   3'- -GG-AG-UCGUG----UGCGCCUUCUUCuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 8766 0.77 0.668328
Target:  5'- uCCUCAGCGC-CGuCGGAagcucccgAGGAGgcGCCg -3'
miRNA:   3'- -GGAGUCGUGuGC-GCCU--------UCUUCuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 50044 0.77 0.678413
Target:  5'- ----cGCACACGCGGggGcuGGUGCUg -3'
miRNA:   3'- ggaguCGUGUGCGCCuuCuuCUACGG- -5'
9134 5' -52.3 NC_002512.2 + 134020 0.76 0.737837
Target:  5'- uCCUCGGC--GCGCGGcccuGGGAGGAcGCCg -3'
miRNA:   3'- -GGAGUCGugUGCGCC----UUCUUCUaCGG- -5'
9134 5' -52.3 NC_002512.2 + 102492 0.75 0.757017
Target:  5'- cCCUCGGCgucguucccGC-CGCGGGAGucGcgGCCg -3'
miRNA:   3'- -GGAGUCG---------UGuGCGCCUUCuuCuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 113500 0.74 0.794001
Target:  5'- -gUCcGCGCugGCGGAAGAAGuUGUUg -3'
miRNA:   3'- ggAGuCGUGugCGCCUUCUUCuACGG- -5'
9134 5' -52.3 NC_002512.2 + 28279 0.74 0.811666
Target:  5'- gCUCGGCGCugGCGG-AGAAcuucauccgcucGGUGUCc -3'
miRNA:   3'- gGAGUCGUGugCGCCuUCUU------------CUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.