miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9134 5' -52.3 NC_002512.2 + 170 0.67 0.99017
Target:  5'- ---gAGCGCGCGcCGGGagggacgggggcgAGAAGggGCCc -3'
miRNA:   3'- ggagUCGUGUGC-GCCU-------------UCUUCuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 2683 0.71 0.930679
Target:  5'- gCCUCcuGGUccGCGCGCGGGAGcgccUGCCg -3'
miRNA:   3'- -GGAG--UCG--UGUGCGCCUUCuucuACGG- -5'
9134 5' -52.3 NC_002512.2 + 3808 0.66 0.996386
Target:  5'- cCCgagAGCGagccguCGaCGGAAGAguAGGUGCCg -3'
miRNA:   3'- -GGag-UCGUgu----GC-GCCUUCU--UCUACGG- -5'
9134 5' -52.3 NC_002512.2 + 3978 0.67 0.991475
Target:  5'- cCCUCGGUcgACGCGCuccucGGGAGGcgGGggGCg -3'
miRNA:   3'- -GGAGUCG--UGUGCG-----CCUUCU--UCuaCGg -5'
9134 5' -52.3 NC_002512.2 + 4193 0.67 0.988852
Target:  5'- uCCUgAGgACGC-CGGAgaucgguGGGAGcgGCCg -3'
miRNA:   3'- -GGAgUCgUGUGcGCCU-------UCUUCuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 4871 0.66 0.995594
Target:  5'- gCCgcgugCGGCGCcggcuggaggagcgGCGacgGGAAGAGGgcGCCg -3'
miRNA:   3'- -GGa----GUCGUG--------------UGCg--CCUUCUUCuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 5099 0.69 0.973101
Target:  5'- gCgUCGGCGCGgGCGGGAG-AGAcaucGUCg -3'
miRNA:   3'- -GgAGUCGUGUgCGCCUUCuUCUa---CGG- -5'
9134 5' -52.3 NC_002512.2 + 5450 0.66 0.995112
Target:  5'- gCgUCGGCGCGuagaGCGGAAGggG--GCa -3'
miRNA:   3'- -GgAGUCGUGUg---CGCCUUCuuCuaCGg -5'
9134 5' -52.3 NC_002512.2 + 5551 0.72 0.891886
Target:  5'- cCCggcgCGGCGC-CGCGGAaaaacAGAcgacgacacgagguaAGGUGCCg -3'
miRNA:   3'- -GGa---GUCGUGuGCGCCU-----UCU---------------UCUACGG- -5'
9134 5' -52.3 NC_002512.2 + 5904 0.72 0.895827
Target:  5'- aCggCGGgGCGCGCGGggGAuacgGCCa -3'
miRNA:   3'- gGa-GUCgUGUGCGCCuuCUucuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 8766 0.77 0.668328
Target:  5'- uCCUCAGCGC-CGuCGGAagcucccgAGGAGgcGCCg -3'
miRNA:   3'- -GGAGUCGUGuGC-GCCU--------UCUUCuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 9218 0.7 0.940421
Target:  5'- gCC-CAGCACgACGCGGcGGGccAGGUGgCg -3'
miRNA:   3'- -GGaGUCGUG-UGCGCCuUCU--UCUACgG- -5'
9134 5' -52.3 NC_002512.2 + 10349 0.68 0.985973
Target:  5'- cCCgucCGGUggGCACGCcgacGAAGAcggGGGUGCCg -3'
miRNA:   3'- -GGa--GUCG--UGUGCGc---CUUCU---UCUACGG- -5'
9134 5' -52.3 NC_002512.2 + 10440 0.77 0.658213
Target:  5'- gCCgUCgGGCACggggGCGCGGAGGAGGccGCCg -3'
miRNA:   3'- -GG-AG-UCGUG----UGCGCCUUCUUCuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 11396 0.7 0.952899
Target:  5'- gCUCGGaCGCGgacgaccCGCGGGacgAGGAGAUGaCCg -3'
miRNA:   3'- gGAGUC-GUGU-------GCGCCU---UCUUCUAC-GG- -5'
9134 5' -52.3 NC_002512.2 + 12675 0.67 0.992539
Target:  5'- -aUCGGCACGgGcCGGcuggcGAGGAUGCg -3'
miRNA:   3'- ggAGUCGUGUgC-GCCuu---CUUCUACGg -5'
9134 5' -52.3 NC_002512.2 + 14810 0.66 0.99435
Target:  5'- uCCUCGGUcccGCcgACGCGGuAGAcGccGCCg -3'
miRNA:   3'- -GGAGUCG---UG--UGCGCCuUCUuCuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 15390 0.7 0.949233
Target:  5'- uUCUCGGCGaucCGCaGGAggcGGAAGAcGCCg -3'
miRNA:   3'- -GGAGUCGUgu-GCG-CCU---UCUUCUaCGG- -5'
9134 5' -52.3 NC_002512.2 + 15642 0.67 0.990295
Target:  5'- uCCUCGGcCGCGgGCGGcGAGccGAcgaGCCg -3'
miRNA:   3'- -GGAGUC-GUGUgCGCC-UUCuuCUa--CGG- -5'
9134 5' -52.3 NC_002512.2 + 17068 0.71 0.925455
Target:  5'- aCCcCGGCG-GCGCGGAAGGAGAaaacgGCg -3'
miRNA:   3'- -GGaGUCGUgUGCGCCUUCUUCUa----CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.