Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9143 | 5' | -49.2 | NC_002512.2 | + | 87992 | 1.12 | 0.013101 |
Target: 5'- cGCCCCGACGCGGAGAUUUAUAUAGACc -3' miRNA: 3'- -CGGGGCUGCGCCUCUAAAUAUAUCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 74225 | 0.75 | 0.913931 |
Target: 5'- gGUCCCGACGCGGGGcgaacggccGGACg -3' miRNA: 3'- -CGGGGCUGCGCCUCuaaauaua-UCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 27608 | 0.74 | 0.943967 |
Target: 5'- cGCCCCGgucccacaGCGCGGAGAgacgcuccGGGCg -3' miRNA: 3'- -CGGGGC--------UGCGCCUCUaaauaua-UCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 36788 | 0.73 | 0.958861 |
Target: 5'- uCUCCGGCGCGGAGAUgaagc--GGCa -3' miRNA: 3'- cGGGGCUGCGCCUCUAaauauauCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 120060 | 0.72 | 0.965508 |
Target: 5'- cGCCCgGcgguucgacgugaACGCGGGGucg-AUGUAGACg -3' miRNA: 3'- -CGGGgC-------------UGCGCCUCuaaaUAUAUCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 80820 | 0.72 | 0.96899 |
Target: 5'- cGCCUCGGCgucgGCGGAGGggccccGUAGGCg -3' miRNA: 3'- -CGGGGCUG----CGCCUCUaaaua-UAUCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 141922 | 0.72 | 0.976212 |
Target: 5'- gGCCCCGACGgGGuGAgaauaaaAGACc -3' miRNA: 3'- -CGGGGCUGCgCCuCUaaauauaUCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 90207 | 0.72 | 0.974667 |
Target: 5'- cGUCCCGAUGaCGGAGGUagAUGcggucGGACa -3' miRNA: 3'- -CGGGGCUGC-GCCUCUAaaUAUa----UCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 146691 | 0.71 | 0.986022 |
Target: 5'- cGCCCCGcGCGCGGAcggcgacggAGACg -3' miRNA: 3'- -CGGGGC-UGCGCCUcuaaauauaUCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 72772 | 0.71 | 0.984981 |
Target: 5'- cCCCCGACGCcgGGAGGgacgucgccgGGACg -3' miRNA: 3'- cGGGGCUGCG--CCUCUaaauaua---UCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 39008 | 0.71 | 0.982321 |
Target: 5'- cGCCCCgcGACGCGGGGAaagccccccgcagGUAGAa -3' miRNA: 3'- -CGGGG--CUGCGCCUCUaaaua--------UAUCUg -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 121409 | 0.7 | 0.991275 |
Target: 5'- cGCgCCUGGCGUGGAGGg------AGACg -3' miRNA: 3'- -CG-GGGCUGCGCCUCUaaauauaUCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 197184 | 0.7 | 0.992385 |
Target: 5'- uCUCCGACGCGGAcaacUAUGUcGACa -3' miRNA: 3'- cGGGGCUGCGCCUcuaaAUAUAuCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 65163 | 0.7 | 0.992385 |
Target: 5'- uCCUCGACGuCGGAGucgg--GUAGGCu -3' miRNA: 3'- cGGGGCUGC-GCCUCuaaauaUAUCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 70502 | 0.7 | 0.992064 |
Target: 5'- cGCCCCGACGCcGcGGGAcccgcgaaugGGACg -3' miRNA: 3'- -CGGGGCUGCG-C-CUCUaaauaua---UCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 18767 | 0.7 | 0.990041 |
Target: 5'- gGCCUCGACGCGcAGGU-----UGGACa -3' miRNA: 3'- -CGGGGCUGCGCcUCUAaauauAUCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 226759 | 0.7 | 0.992385 |
Target: 5'- gGCCggaCGACGCGGAGGgcga---GGACg -3' miRNA: 3'- -CGGg--GCUGCGCCUCUaaauauaUCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 80853 | 0.69 | 0.995057 |
Target: 5'- aGCCUCggGACGCGGGGcucgGUGUcGGGCg -3' miRNA: 3'- -CGGGG--CUGCGCCUCuaaaUAUA-UCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 71409 | 0.69 | 0.995622 |
Target: 5'- cGCCCC--CGCGGAGAUcgugcugAGGCu -3' miRNA: 3'- -CGGGGcuGCGCCUCUAaauaua-UCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 48112 | 0.69 | 0.995755 |
Target: 5'- -aCCgGGCGCuGGAGGac-GUGUGGACg -3' miRNA: 3'- cgGGgCUGCG-CCUCUaaaUAUAUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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