miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9143 5' -49.2 NC_002512.2 + 166788 0.66 0.999855
Target:  5'- cGUCCCgGACGaggacguucUGGAGGUggugGUGGGCg -3'
miRNA:   3'- -CGGGG-CUGC---------GCCUCUAaauaUAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 93717 0.67 0.999422
Target:  5'- aCCCCGccGCGCGGcGGAUcgacggGGACg -3'
miRNA:   3'- cGGGGC--UGCGCC-UCUAaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 159878 0.67 0.999289
Target:  5'- -aCCgGACGCaGGGGGUggaggUGUGUcGACg -3'
miRNA:   3'- cgGGgCUGCG-CCUCUAa----AUAUAuCUG- -5'
9143 5' -49.2 NC_002512.2 + 87992 1.12 0.013101
Target:  5'- cGCCCCGACGCGGAGAUUUAUAUAGACc -3'
miRNA:   3'- -CGGGGCUGCGCCUCUAAAUAUAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 98863 0.66 0.999818
Target:  5'- gGCCCCGACGCccucGAGcgcgucgaAGACg -3'
miRNA:   3'- -CGGGGCUGCGc---CUCuaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 130510 0.66 0.9998
Target:  5'- aCCCCGACgcugGCGGAGAgcucggGUcgcgggaacaugccGGACa -3'
miRNA:   3'- cGGGGCUG----CGCCUCUaaaua-UA--------------UCUG- -5'
9143 5' -49.2 NC_002512.2 + 148474 0.66 0.999695
Target:  5'- aGCCgCGACgGCGGGGA-------GGACg -3'
miRNA:   3'- -CGGgGCUG-CGCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 216329 0.66 0.999634
Target:  5'- gGCCCCGACGCGGucggc------GGCu -3'
miRNA:   3'- -CGGGGCUGCGCCucuaaauauauCUG- -5'
9143 5' -49.2 NC_002512.2 + 221585 0.67 0.999533
Target:  5'- uGCUCCGuCGaccCGGAGGggggUcgGUGGACg -3'
miRNA:   3'- -CGGGGCuGC---GCCUCUaa--AuaUAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 162123 0.67 0.999469
Target:  5'- aCCCCGGCGCcGGAGAcgacccc-GGCu -3'
miRNA:   3'- cGGGGCUGCG-CCUCUaaauauauCUG- -5'
9143 5' -49.2 NC_002512.2 + 113719 0.67 0.999533
Target:  5'- gGUCCCGACGCGGGcggcGAUc--UGcGGGCc -3'
miRNA:   3'- -CGGGGCUGCGCCU----CUAaauAUaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 50867 0.66 0.999626
Target:  5'- -aCCCGACGuCGGAGAa------GGACa -3'
miRNA:   3'- cgGGGCUGC-GCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 4147 0.66 0.999855
Target:  5'- aCCgCCGACGCGaGGAUcgu--UGGACg -3'
miRNA:   3'- cGG-GGCUGCGCcUCUAaauauAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 55993 0.67 0.999533
Target:  5'- uGUCCCGACGUaucaaGGGGGUcgUUAUuc-GACg -3'
miRNA:   3'- -CGGGGCUGCG-----CCUCUA--AAUAuauCUG- -5'
9143 5' -49.2 NC_002512.2 + 207765 0.66 0.999855
Target:  5'- aGCCgCCGcCGUGGuGGUUgcg--GGACg -3'
miRNA:   3'- -CGG-GGCuGCGCCuCUAAauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 185417 0.66 0.999626
Target:  5'- gGCCCCGggGCGCccuGGAGGUcu-UcgAGGCc -3'
miRNA:   3'- -CGGGGC--UGCG---CCUCUAaauAuaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 131521 0.67 0.999513
Target:  5'- cCCCaCGACGcCGGAGGgagacg-AGGCg -3'
miRNA:   3'- cGGG-GCUGC-GCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 219051 0.67 0.999303
Target:  5'- gGCCgCGGCGCGGGGcuccccgcGGGCu -3'
miRNA:   3'- -CGGgGCUGCGCCUCuaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 114980 0.66 0.999847
Target:  5'- --gCCGACGCgauGGAGAgggggcugGUGGACa -3'
miRNA:   3'- cggGGCUGCG---CCUCUaaaua---UAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 196214 0.66 0.99974
Target:  5'- aGCCuCCGGCGCGuGAGccucug--AGACc -3'
miRNA:   3'- -CGG-GGCUGCGC-CUCuaaauauaUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.