miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9149 3' -56.9 NC_002512.2 + 123668 0.66 0.96255
Target:  5'- gCGgCCGGGCuCGgGGAAgcGGUcCGUCGc -3'
miRNA:   3'- gGCaGGCCUG-GCgCCUU--CCAaGCAGU- -5'
9149 3' -56.9 NC_002512.2 + 48801 0.66 0.953448
Target:  5'- gCGUCgcggcacagggagaGGAUCGCGaGGAGGUUCG-CGg -3'
miRNA:   3'- gGCAGg-------------CCUGGCGC-CUUCCAAGCaGU- -5'
9149 3' -56.9 NC_002512.2 + 228188 0.66 0.960569
Target:  5'- aCCGUCCGGgagaccuacuucgagGCCGCGGucGAGGccgggCGa-- -3'
miRNA:   3'- -GGCAGGCC---------------UGGCGCC--UUCCaa---GCagu -5'
9149 3' -56.9 NC_002512.2 + 127479 0.66 0.959209
Target:  5'- gCCGUCCGGA-CGCGGcga---CGUCGg -3'
miRNA:   3'- -GGCAGGCCUgGCGCCuuccaaGCAGU- -5'
9149 3' -56.9 NC_002512.2 + 218214 0.66 0.951926
Target:  5'- cCCGcCuCGGGCCGCGGcGGGccgCGg-- -3'
miRNA:   3'- -GGCaG-GCCUGGCGCCuUCCaa-GCagu -5'
9149 3' -56.9 NC_002512.2 + 152607 0.66 0.959209
Target:  5'- aCCGgguuucgagcUCCGGgGCCG-GGGAGGUUC-UCGc -3'
miRNA:   3'- -GGC----------AGGCC-UGGCgCCUUCCAAGcAGU- -5'
9149 3' -56.9 NC_002512.2 + 100481 0.66 0.959209
Target:  5'- gUCGUggcCCGGACCuugGGGAGGccgcggUCGUCGa -3'
miRNA:   3'- -GGCA---GGCCUGGcg-CCUUCCa-----AGCAGU- -5'
9149 3' -56.9 NC_002512.2 + 33187 0.66 0.955669
Target:  5'- gCCGgUCGGGCUgGCGGAcGGUgccgcUCGUCc -3'
miRNA:   3'- -GGCaGGCCUGG-CGCCUuCCA-----AGCAGu -5'
9149 3' -56.9 NC_002512.2 + 94285 0.66 0.951926
Target:  5'- gCGUCCacGGCCGgGGAGcGG-UCGUCc -3'
miRNA:   3'- gGCAGGc-CUGGCgCCUU-CCaAGCAGu -5'
9149 3' -56.9 NC_002512.2 + 190417 0.66 0.947976
Target:  5'- gUCG-CCGGggGCUGCGGGAGcGggcCGUCAc -3'
miRNA:   3'- -GGCaGGCC--UGGCGCCUUC-Caa-GCAGU- -5'
9149 3' -56.9 NC_002512.2 + 213006 0.66 0.962225
Target:  5'- gCCGUCgGGcCCGgGGcccucucGAGGUgCGUCc -3'
miRNA:   3'- -GGCAGgCCuGGCgCC-------UUCCAaGCAGu -5'
9149 3' -56.9 NC_002512.2 + 102247 0.66 0.959209
Target:  5'- uCCGacCCGGGCC-CGGGuccGGGcgUCGUCc -3'
miRNA:   3'- -GGCa-GGCCUGGcGCCU---UCCa-AGCAGu -5'
9149 3' -56.9 NC_002512.2 + 95731 0.66 0.943818
Target:  5'- -gGUCCGGGUCGaCGGGuacccguccGGGUugaUCGUCAg -3'
miRNA:   3'- ggCAGGCCUGGC-GCCU---------UCCA---AGCAGU- -5'
9149 3' -56.9 NC_002512.2 + 102949 0.66 0.959209
Target:  5'- gUCGaCCGGGgCGCGGgcGGguaUCGcCAg -3'
miRNA:   3'- -GGCaGGCCUgGCGCCuuCCa--AGCaGU- -5'
9149 3' -56.9 NC_002512.2 + 94977 0.66 0.951926
Target:  5'- gCCGcgCCGGuCCGCGuacAGGUgcgCGUCc -3'
miRNA:   3'- -GGCa-GGCCuGGCGCcu-UCCAa--GCAGu -5'
9149 3' -56.9 NC_002512.2 + 176437 0.66 0.96255
Target:  5'- gCCaUCUGcGCCGCGGucGGggUGUCGg -3'
miRNA:   3'- -GGcAGGCcUGGCGCCuuCCaaGCAGU- -5'
9149 3' -56.9 NC_002512.2 + 136891 0.66 0.96255
Target:  5'- aCCGUCgCGGGCCucUGGu-GGUUCGcCGa -3'
miRNA:   3'- -GGCAG-GCCUGGc-GCCuuCCAAGCaGU- -5'
9149 3' -56.9 NC_002512.2 + 107206 0.66 0.952309
Target:  5'- aCCaG-CCGGGCCGCGGccGGGgagccgcggucaccgUCGUCc -3'
miRNA:   3'- -GG-CaGGCCUGGCGCCu-UCCa--------------AGCAGu -5'
9149 3' -56.9 NC_002512.2 + 100388 0.66 0.951926
Target:  5'- cCCGacuUCCcGGCCGCGGAGaGcgUCGUCu -3'
miRNA:   3'- -GGC---AGGcCUGGCGCCUUcCa-AGCAGu -5'
9149 3' -56.9 NC_002512.2 + 207041 0.66 0.963832
Target:  5'- gCCGUCCGG-CagGUGGAAcGGgcucgccaucacggUCGUCGa -3'
miRNA:   3'- -GGCAGGCCuGg-CGCCUU-CCa-------------AGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.