Results 1 - 20 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9149 | 3' | -56.9 | NC_002512.2 | + | 1310 | 0.68 | 0.914392 |
Target: 5'- gCCG-CCGacacGACCGCGGuAAGGaagCGUCc -3' miRNA: 3'- -GGCaGGC----CUGGCGCC-UUCCaa-GCAGu -5' |
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9149 | 3' | -56.9 | NC_002512.2 | + | 3237 | 0.68 | 0.884034 |
Target: 5'- uCCGUCCGucCCGUccgacaucaGGAAGGUUCuUCc -3' miRNA: 3'- -GGCAGGCcuGGCG---------CCUUCCAAGcAGu -5' |
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9149 | 3' | -56.9 | NC_002512.2 | + | 3474 | 0.73 | 0.633267 |
Target: 5'- gCGUCCGGAgaCGCGGAcgcgacGGGUcccggcgccgUCGUCGg -3' miRNA: 3'- gGCAGGCCUg-GCGCCU------UCCA----------AGCAGU- -5' |
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9149 | 3' | -56.9 | NC_002512.2 | + | 9689 | 0.67 | 0.930069 |
Target: 5'- gCCGU-CGGGCCccgGCGG-GGGUUCG-CGg -3' miRNA: 3'- -GGCAgGCCUGG---CGCCuUCCAAGCaGU- -5' |
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9149 | 3' | -56.9 | NC_002512.2 | + | 13571 | 0.67 | 0.934865 |
Target: 5'- gCGUCgGGGCCGCaGAugcAGGUgacccaCGUCc -3' miRNA: 3'- gGCAGgCCUGGCGcCU---UCCAa-----GCAGu -5' |
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9149 | 3' | -56.9 | NC_002512.2 | + | 24675 | 0.76 | 0.473144 |
Target: 5'- uCCGUcCCGGGCCGCucGGGcggGGGUcUCGUCGa -3' miRNA: 3'- -GGCA-GGCCUGGCG--CCU---UCCA-AGCAGU- -5' |
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9149 | 3' | -56.9 | NC_002512.2 | + | 24839 | 0.67 | 0.919832 |
Target: 5'- -gGUCCGGGcCCGCGGccGG-UCGgCGg -3' miRNA: 3'- ggCAGGCCU-GGCGCCuuCCaAGCaGU- -5' |
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9149 | 3' | -56.9 | NC_002512.2 | + | 29164 | 0.67 | 0.939448 |
Target: 5'- cCCGUUCGGACCGcCGGgcGGcagcccgaCGcCAc -3' miRNA: 3'- -GGCAGGCCUGGC-GCCuuCCaa------GCaGU- -5' |
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9149 | 3' | -56.9 | NC_002512.2 | + | 32565 | 0.7 | 0.808954 |
Target: 5'- gCCG-CCGGgcGCCGCGGGugccgGGGUcgUGUCGg -3' miRNA: 3'- -GGCaGGCC--UGGCGCCU-----UCCAa-GCAGU- -5' |
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9149 | 3' | -56.9 | NC_002512.2 | + | 33187 | 0.66 | 0.955669 |
Target: 5'- gCCGgUCGGGCUgGCGGAcGGUgccgcUCGUCc -3' miRNA: 3'- -GGCaGGCCUGG-CGCCUuCCA-----AGCAGu -5' |
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9149 | 3' | -56.9 | NC_002512.2 | + | 34842 | 0.68 | 0.908739 |
Target: 5'- cCCGcCCgcGGGCCGCGGcGGcuucUUCGUCGc -3' miRNA: 3'- -GGCaGG--CCUGGCGCCuUCc---AAGCAGU- -5' |
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9149 | 3' | -56.9 | NC_002512.2 | + | 35570 | 0.72 | 0.719644 |
Target: 5'- aCCGUcCCGGGCCacgaGGAAGGUgaccUGUCGg -3' miRNA: 3'- -GGCA-GGCCUGGcg--CCUUCCAa---GCAGU- -5' |
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9149 | 3' | -56.9 | NC_002512.2 | + | 42633 | 0.72 | 0.691183 |
Target: 5'- aCGUCCGccaucaaCGCGGAGGGUUCGaCGa -3' miRNA: 3'- gGCAGGCcug----GCGCCUUCCAAGCaGU- -5' |
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9149 | 3' | -56.9 | NC_002512.2 | + | 45311 | 0.67 | 0.919832 |
Target: 5'- gCCGcccugCCGGcCCGCGGGucggAGGgcCGUCc -3' miRNA: 3'- -GGCa----GGCCuGGCGCCU----UCCaaGCAGu -5' |
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9149 | 3' | -56.9 | NC_002512.2 | + | 48801 | 0.66 | 0.953448 |
Target: 5'- gCGUCgcggcacagggagaGGAUCGCGaGGAGGUUCG-CGg -3' miRNA: 3'- gGCAGg-------------CCUGGCGC-CUUCCAAGCaGU- -5' |
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9149 | 3' | -56.9 | NC_002512.2 | + | 71271 | 0.67 | 0.925058 |
Target: 5'- gCCGUCCaGGGCCGCcaGGAcccGGGagCG-CAc -3' miRNA: 3'- -GGCAGG-CCUGGCG--CCU---UCCaaGCaGU- -5' |
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9149 | 3' | -56.9 | NC_002512.2 | + | 75437 | 0.72 | 0.719644 |
Target: 5'- aCGUCCGGAUCG-GGgcGGgaCGUCc -3' miRNA: 3'- gGCAGGCCUGGCgCCuuCCaaGCAGu -5' |
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9149 | 3' | -56.9 | NC_002512.2 | + | 78330 | 1.11 | 0.003746 |
Target: 5'- aCCGUCCGGACCGCGGAAGGUUCGUCAg -3' miRNA: 3'- -GGCAGGCCUGGCGCCUUCCAAGCAGU- -5' |
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9149 | 3' | -56.9 | NC_002512.2 | + | 78838 | 0.68 | 0.905246 |
Target: 5'- gCCGUgaGGACCGCGuGAcgggccgccgccucgAGGUggcucgCGUCGc -3' miRNA: 3'- -GGCAggCCUGGCGC-CU---------------UCCAa-----GCAGU- -5' |
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9149 | 3' | -56.9 | NC_002512.2 | + | 79467 | 0.69 | 0.863394 |
Target: 5'- cCCGUCgGGGcgaccgcgcgcCCGUGGgcGGUUCGg-- -3' miRNA: 3'- -GGCAGgCCU-----------GGCGCCuuCCAAGCagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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