miRNA display CGI


Results 1 - 20 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9149 3' -56.9 NC_002512.2 + 1310 0.68 0.914392
Target:  5'- gCCG-CCGacacGACCGCGGuAAGGaagCGUCc -3'
miRNA:   3'- -GGCaGGC----CUGGCGCC-UUCCaa-GCAGu -5'
9149 3' -56.9 NC_002512.2 + 3237 0.68 0.884034
Target:  5'- uCCGUCCGucCCGUccgacaucaGGAAGGUUCuUCc -3'
miRNA:   3'- -GGCAGGCcuGGCG---------CCUUCCAAGcAGu -5'
9149 3' -56.9 NC_002512.2 + 3474 0.73 0.633267
Target:  5'- gCGUCCGGAgaCGCGGAcgcgacGGGUcccggcgccgUCGUCGg -3'
miRNA:   3'- gGCAGGCCUg-GCGCCU------UCCA----------AGCAGU- -5'
9149 3' -56.9 NC_002512.2 + 9689 0.67 0.930069
Target:  5'- gCCGU-CGGGCCccgGCGG-GGGUUCG-CGg -3'
miRNA:   3'- -GGCAgGCCUGG---CGCCuUCCAAGCaGU- -5'
9149 3' -56.9 NC_002512.2 + 13571 0.67 0.934865
Target:  5'- gCGUCgGGGCCGCaGAugcAGGUgacccaCGUCc -3'
miRNA:   3'- gGCAGgCCUGGCGcCU---UCCAa-----GCAGu -5'
9149 3' -56.9 NC_002512.2 + 24675 0.76 0.473144
Target:  5'- uCCGUcCCGGGCCGCucGGGcggGGGUcUCGUCGa -3'
miRNA:   3'- -GGCA-GGCCUGGCG--CCU---UCCA-AGCAGU- -5'
9149 3' -56.9 NC_002512.2 + 24839 0.67 0.919832
Target:  5'- -gGUCCGGGcCCGCGGccGG-UCGgCGg -3'
miRNA:   3'- ggCAGGCCU-GGCGCCuuCCaAGCaGU- -5'
9149 3' -56.9 NC_002512.2 + 29164 0.67 0.939448
Target:  5'- cCCGUUCGGACCGcCGGgcGGcagcccgaCGcCAc -3'
miRNA:   3'- -GGCAGGCCUGGC-GCCuuCCaa------GCaGU- -5'
9149 3' -56.9 NC_002512.2 + 32565 0.7 0.808954
Target:  5'- gCCG-CCGGgcGCCGCGGGugccgGGGUcgUGUCGg -3'
miRNA:   3'- -GGCaGGCC--UGGCGCCU-----UCCAa-GCAGU- -5'
9149 3' -56.9 NC_002512.2 + 33187 0.66 0.955669
Target:  5'- gCCGgUCGGGCUgGCGGAcGGUgccgcUCGUCc -3'
miRNA:   3'- -GGCaGGCCUGG-CGCCUuCCA-----AGCAGu -5'
9149 3' -56.9 NC_002512.2 + 34842 0.68 0.908739
Target:  5'- cCCGcCCgcGGGCCGCGGcGGcuucUUCGUCGc -3'
miRNA:   3'- -GGCaGG--CCUGGCGCCuUCc---AAGCAGU- -5'
9149 3' -56.9 NC_002512.2 + 35570 0.72 0.719644
Target:  5'- aCCGUcCCGGGCCacgaGGAAGGUgaccUGUCGg -3'
miRNA:   3'- -GGCA-GGCCUGGcg--CCUUCCAa---GCAGU- -5'
9149 3' -56.9 NC_002512.2 + 42633 0.72 0.691183
Target:  5'- aCGUCCGccaucaaCGCGGAGGGUUCGaCGa -3'
miRNA:   3'- gGCAGGCcug----GCGCCUUCCAAGCaGU- -5'
9149 3' -56.9 NC_002512.2 + 45311 0.67 0.919832
Target:  5'- gCCGcccugCCGGcCCGCGGGucggAGGgcCGUCc -3'
miRNA:   3'- -GGCa----GGCCuGGCGCCU----UCCaaGCAGu -5'
9149 3' -56.9 NC_002512.2 + 48801 0.66 0.953448
Target:  5'- gCGUCgcggcacagggagaGGAUCGCGaGGAGGUUCG-CGg -3'
miRNA:   3'- gGCAGg-------------CCUGGCGC-CUUCCAAGCaGU- -5'
9149 3' -56.9 NC_002512.2 + 71271 0.67 0.925058
Target:  5'- gCCGUCCaGGGCCGCcaGGAcccGGGagCG-CAc -3'
miRNA:   3'- -GGCAGG-CCUGGCG--CCU---UCCaaGCaGU- -5'
9149 3' -56.9 NC_002512.2 + 75437 0.72 0.719644
Target:  5'- aCGUCCGGAUCG-GGgcGGgaCGUCc -3'
miRNA:   3'- gGCAGGCCUGGCgCCuuCCaaGCAGu -5'
9149 3' -56.9 NC_002512.2 + 78330 1.11 0.003746
Target:  5'- aCCGUCCGGACCGCGGAAGGUUCGUCAg -3'
miRNA:   3'- -GGCAGGCCUGGCGCCUUCCAAGCAGU- -5'
9149 3' -56.9 NC_002512.2 + 78838 0.68 0.905246
Target:  5'- gCCGUgaGGACCGCGuGAcgggccgccgccucgAGGUggcucgCGUCGc -3'
miRNA:   3'- -GGCAggCCUGGCGC-CU---------------UCCAa-----GCAGU- -5'
9149 3' -56.9 NC_002512.2 + 79467 0.69 0.863394
Target:  5'- cCCGUCgGGGcgaccgcgcgcCCGUGGgcGGUUCGg-- -3'
miRNA:   3'- -GGCAGgCCU-----------GGCGCCuuCCAAGCagu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.