miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9149 3' -56.9 NC_002512.2 + 202361 0.81 0.282189
Target:  5'- uCUGUCCGGGCgGCGGcGGG-UCGUCGa -3'
miRNA:   3'- -GGCAGGCCUGgCGCCuUCCaAGCAGU- -5'
9149 3' -56.9 NC_002512.2 + 104293 0.69 0.877349
Target:  5'- gCGUCCGG-CgGCGGGAGGcugcCGUgAa -3'
miRNA:   3'- gGCAGGCCuGgCGCCUUCCaa--GCAgU- -5'
9149 3' -56.9 NC_002512.2 + 79467 0.69 0.863394
Target:  5'- cCCGUCgGGGcgaccgcgcgcCCGUGGgcGGUUCGg-- -3'
miRNA:   3'- -GGCAGgCCU-----------GGCGCCuuCCAAGCagu -5'
9149 3' -56.9 NC_002512.2 + 85227 0.69 0.856133
Target:  5'- cUCGcCCGGACCGCGaacAGGUggUCGUa- -3'
miRNA:   3'- -GGCaGGCCUGGCGCcu-UCCA--AGCAgu -5'
9149 3' -56.9 NC_002512.2 + 32565 0.7 0.808954
Target:  5'- gCCG-CCGGgcGCCGCGGGugccgGGGUcgUGUCGg -3'
miRNA:   3'- -GGCaGGCC--UGGCGCCU-----UCCAa-GCAGU- -5'
9149 3' -56.9 NC_002512.2 + 118054 0.7 0.799699
Target:  5'- cCCGUgcCCGGGcucgacuCCGCGGAGGGggCGg-- -3'
miRNA:   3'- -GGCA--GGCCU-------GGCGCCUUCCaaGCagu -5'
9149 3' -56.9 NC_002512.2 + 83201 0.71 0.774537
Target:  5'- cCCGUCCGcGCgcgggGCGGggGGagCGUCGg -3'
miRNA:   3'- -GGCAGGCcUGg----CGCCuuCCaaGCAGU- -5'
9149 3' -56.9 NC_002512.2 + 131036 0.71 0.756614
Target:  5'- gCGUCgGGGCCGCGGggGaGgaCGg-- -3'
miRNA:   3'- gGCAGgCCUGGCGCCuuC-CaaGCagu -5'
9149 3' -56.9 NC_002512.2 + 75437 0.72 0.719644
Target:  5'- aCGUCCGGAUCG-GGgcGGgaCGUCc -3'
miRNA:   3'- gGCAGGCCUGGCgCCuuCCaaGCAGu -5'
9149 3' -56.9 NC_002512.2 + 35570 0.72 0.719644
Target:  5'- aCCGUcCCGGGCCacgaGGAAGGUgaccUGUCGg -3'
miRNA:   3'- -GGCA-GGCCUGGcg--CCUUCCAa---GCAGU- -5'
9149 3' -56.9 NC_002512.2 + 42633 0.72 0.691183
Target:  5'- aCGUCCGccaucaaCGCGGAGGGUUCGaCGa -3'
miRNA:   3'- gGCAGGCcug----GCGCCUUCCAAGCaGU- -5'
9149 3' -56.9 NC_002512.2 + 102150 0.73 0.65265
Target:  5'- aCGgCCGcGACCGCGGcuGGgUCGUCGa -3'
miRNA:   3'- gGCaGGC-CUGGCGCCuuCCaAGCAGU- -5'
9149 3' -56.9 NC_002512.2 + 3474 0.73 0.633267
Target:  5'- gCGUCCGGAgaCGCGGAcgcgacGGGUcccggcgccgUCGUCGg -3'
miRNA:   3'- gGCAGGCCUg-GCGCCU------UCCA----------AGCAGU- -5'
9149 3' -56.9 NC_002512.2 + 80642 0.75 0.565736
Target:  5'- gCCGUCCGcGGCgGCGGcgccGGGUcCGUCGg -3'
miRNA:   3'- -GGCAGGC-CUGgCGCCu---UCCAaGCAGU- -5'
9149 3' -56.9 NC_002512.2 + 130547 0.76 0.50938
Target:  5'- aCCGUCCGGAugcUCGUcGAGGaGUUCGUCGu -3'
miRNA:   3'- -GGCAGGCCU---GGCGcCUUC-CAAGCAGU- -5'
9149 3' -56.9 NC_002512.2 + 103358 0.76 0.491107
Target:  5'- -aGUCCgGGGCCGCGGucGGgUCGUCc -3'
miRNA:   3'- ggCAGG-CCUGGCGCCuuCCaAGCAGu -5'
9149 3' -56.9 NC_002512.2 + 24675 0.76 0.473144
Target:  5'- uCCGUcCCGGGCCGCucGGGcggGGGUcUCGUCGa -3'
miRNA:   3'- -GGCA-GGCCUGGCG--CCU---UCCA-AGCAGU- -5'
9149 3' -56.9 NC_002512.2 + 142272 0.76 0.473144
Target:  5'- gUCGUCCGGGCCGgGGAcGG--CGUCGa -3'
miRNA:   3'- -GGCAGGCCUGGCgCCUuCCaaGCAGU- -5'
9149 3' -56.9 NC_002512.2 + 81291 0.78 0.388804
Target:  5'- gCgGUCCGGGCCuGCGGGguGGGUUUGUUg -3'
miRNA:   3'- -GgCAGGCCUGG-CGCCU--UCCAAGCAGu -5'
9149 3' -56.9 NC_002512.2 + 107860 0.89 0.089309
Target:  5'- uCUGUCCGGACCGCGuGGAGGccgUCGUCAc -3'
miRNA:   3'- -GGCAGGCCUGGCGC-CUUCCa--AGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.