miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9154 3' -53.6 NC_002512.2 + 153745 0.7 0.902216
Target:  5'- uGGGGGGGuggucgaaucGGACGACGuc-AUCGACAc -3'
miRNA:   3'- -UCCCCUU----------CCUGCUGCuacUAGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 103407 0.68 0.957133
Target:  5'- cGGGGAuccGGGCGACGc-GA-CGACGAc -3'
miRNA:   3'- uCCCCUu--CCUGCUGCuaCUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 86251 0.68 0.953295
Target:  5'- cGGGGGAgAGGGCcgaGGCGggGAggGACGAa -3'
miRNA:   3'- -UCCCCU-UCCUG---CUGCuaCUagCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 4444 0.69 0.944943
Target:  5'- cGGGGugccGGGCG-CGggGGUCGGCGu -3'
miRNA:   3'- uCCCCuu--CCUGCuGCuaCUAGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 110274 0.69 0.944943
Target:  5'- gGGGcGGGAGGcgaGCGGCGA-GggCGACAc -3'
miRNA:   3'- -UCC-CCUUCC---UGCUGCUaCuaGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 103033 0.69 0.940421
Target:  5'- -cGGGAagAGGACGACGgcGAcgaccgCGACGAg -3'
miRNA:   3'- ucCCCU--UCCUGCUGCuaCUa-----GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 121878 0.69 0.940421
Target:  5'- gAGGGGGAGGuCG-CGggGGacgcUCGGCGAc -3'
miRNA:   3'- -UCCCCUUCCuGCuGCuaCU----AGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 11736 0.69 0.939956
Target:  5'- cGGGGAcgaggccGGGAgCGACGAcGA-CGACGAc -3'
miRNA:   3'- uCCCCU-------UCCU-GCUGCUaCUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 123142 0.69 0.935667
Target:  5'- cGGGGGAcGGGGCGGCGGcgccgcGAUCGcCGc -3'
miRNA:   3'- -UCCCCU-UCCUGCUGCUa-----CUAGCuGUu -5'
9154 3' -53.6 NC_002512.2 + 86943 0.69 0.930679
Target:  5'- --cGGAGGaGACGGCGAUGGugacgcugucggUCGACGAa -3'
miRNA:   3'- uccCCUUC-CUGCUGCUACU------------AGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 122013 0.69 0.930679
Target:  5'- gAGGGGccGGA-GGCGGcgGAUCGGCGc -3'
miRNA:   3'- -UCCCCuuCCUgCUGCUa-CUAGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 56991 0.69 0.919996
Target:  5'- cGGGGGAcagccguGGGCGGCcg-GGUCGGCGGu -3'
miRNA:   3'- -UCCCCUu------CCUGCUGcuaCUAGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 11469 0.7 0.902216
Target:  5'- aAGGGGcggagaccgcGAGGACGACGAcgacgGAgaggaCGACGAg -3'
miRNA:   3'- -UCCCC----------UUCCUGCUGCUa----CUa----GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 75551 0.66 0.98899
Target:  5'- uGGcGGAGGACGACGAcgcgGA-CGACu- -3'
miRNA:   3'- uCCcCUUCCUGCUGCUa---CUaGCUGuu -5'
9154 3' -53.6 NC_002512.2 + 223275 0.66 0.988573
Target:  5'- gGGGGGcGGGACGccgcgcgcagcuacAUGGUGccgccgGUCGACAc -3'
miRNA:   3'- -UCCCCuUCCUGC--------------UGCUAC------UAGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 157161 0.66 0.987552
Target:  5'- cGGcGGGccGGGCGGCG-UGggCGGCGg -3'
miRNA:   3'- -UC-CCCuuCCUGCUGCuACuaGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 189896 0.66 0.987552
Target:  5'- cGGcGGcGAGGACGGCGgcGAggaCGGCGg -3'
miRNA:   3'- uCC-CC-UUCCUGCUGCuaCUa--GCUGUu -5'
9154 3' -53.6 NC_002512.2 + 158846 0.66 0.987552
Target:  5'- cGGGGGAgcGGGGgGACGucgucGUCGACc- -3'
miRNA:   3'- -UCCCCU--UCCUgCUGCuac--UAGCUGuu -5'
9154 3' -53.6 NC_002512.2 + 184126 0.66 0.987552
Target:  5'- cGGGGGcGGGuucgcCGACGAcGAcagCGACGAc -3'
miRNA:   3'- -UCCCCuUCCu----GCUGCUaCUa--GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 223726 0.66 0.985973
Target:  5'- -cGGGGAGGACGAcCGGgagaccGUCGugGAg -3'
miRNA:   3'- ucCCCUUCCUGCU-GCUac----UAGCugUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.