Results 41 - 60 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9154 | 3' | -53.6 | NC_002512.2 | + | 104638 | 0.71 | 0.86057 |
Target: 5'- gAGGGGGAGGGCGGCGc-GAaCGAgGg -3' miRNA: 3'- -UCCCCUUCCUGCUGCuaCUaGCUgUu -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 108373 | 0.67 | 0.970319 |
Target: 5'- uGGGGGAucGGGAgGGCGggGggCGAg-- -3' miRNA: 3'- -UCCCCU--UCCUgCUGCuaCuaGCUguu -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 108410 | 0.75 | 0.648078 |
Target: 5'- gGGGGGGAGGACGGgGAcGG-CGGCGGg -3' miRNA: 3'- -UCCCCUUCCUGCUgCUaCUaGCUGUU- -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 109252 | 0.66 | 0.985973 |
Target: 5'- -cGGGAagAGGugGACGuuucucggacagGUGAUCGugAu -3' miRNA: 3'- ucCCCU--UCCugCUGC------------UACUAGCugUu -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 109800 | 0.67 | 0.967337 |
Target: 5'- cAGGGGGAGGGCGAacagGAUCa---- -3' miRNA: 3'- -UCCCCUUCCUGCUgcuaCUAGcuguu -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 110274 | 0.69 | 0.944943 |
Target: 5'- gGGGcGGGAGGcgaGCGGCGA-GggCGACAc -3' miRNA: 3'- -UCC-CCUUCC---UGCUGCUaCuaGCUGUu -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 114216 | 0.67 | 0.978091 |
Target: 5'- gAGGcGGAA-GAUGGCGGUGAugugguccucaUCGACGg -3' miRNA: 3'- -UCC-CCUUcCUGCUGCUACU-----------AGCUGUu -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 114478 | 0.71 | 0.865827 |
Target: 5'- uGGGGGAAaacuGGACGGCGAcgGAgcugcugucgaagaUCGACGu -3' miRNA: 3'- -UCCCCUU----CCUGCUGCUa-CU--------------AGCUGUu -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 118131 | 0.66 | 0.980312 |
Target: 5'- cGGGGGAgGGGGCGGgGGcgGAaccgCGACAu -3' miRNA: 3'- -UCCCCU-UCCUGCUgCUa-CUa---GCUGUu -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 120792 | 0.66 | 0.982361 |
Target: 5'- cGGGGGcggcGGGACGGCGgcGGUCucucggacccggGACGc -3' miRNA: 3'- uCCCCU----UCCUGCUGCuaCUAG------------CUGUu -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 121793 | 0.66 | 0.987552 |
Target: 5'- cGGGGAcgccgaaGACGACGAcGA-CGACGAc -3' miRNA: 3'- uCCCCUuc-----CUGCUGCUaCUaGCUGUU- -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 121842 | 0.84 | 0.260401 |
Target: 5'- gGGGGGGAGGACGGCGggGAggaCGGCGg -3' miRNA: 3'- -UCCCCUUCCUGCUGCuaCUa--GCUGUu -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 121878 | 0.69 | 0.940421 |
Target: 5'- gAGGGGGAGGuCG-CGggGGacgcUCGGCGAc -3' miRNA: 3'- -UCCCCUUCCuGCuGCuaCU----AGCUGUU- -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 122013 | 0.69 | 0.930679 |
Target: 5'- gAGGGGccGGA-GGCGGcgGAUCGGCGc -3' miRNA: 3'- -UCCCCuuCCUgCUGCUa-CUAGCUGUu -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 122220 | 0.7 | 0.902216 |
Target: 5'- aAGGGGAcGG-CGACGGUGGUCcugaGGCu- -3' miRNA: 3'- -UCCCCUuCCuGCUGCUACUAG----CUGuu -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 123142 | 0.69 | 0.935667 |
Target: 5'- cGGGGGAcGGGGCGGCGGcgccgcGAUCGcCGc -3' miRNA: 3'- -UCCCCU-UCCUGCUGCUa-----CUAGCuGUu -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 123394 | 0.71 | 0.875319 |
Target: 5'- cGGGGAGuucuucucGGACGGCGAggcGGUCGAgGu -3' miRNA: 3'- uCCCCUU--------CCUGCUGCUa--CUAGCUgUu -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 123566 | 0.72 | 0.811666 |
Target: 5'- gAGGGGGAGaGCGACGGgcUGGaCGACGGg -3' miRNA: 3'- -UCCCCUUCcUGCUGCU--ACUaGCUGUU- -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 123915 | 0.66 | 0.98899 |
Target: 5'- gAGcGGGAAGGugGACGGcgggcUGGcCGuCAGa -3' miRNA: 3'- -UC-CCCUUCCugCUGCU-----ACUaGCuGUU- -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 126917 | 0.66 | 0.983135 |
Target: 5'- gGGGGGAGgccGGGCuGGCGAUacccgcccgcgccccGGUCGACc- -3' miRNA: 3'- -UCCCCUU---CCUG-CUGCUA---------------CUAGCUGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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