miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9154 3' -53.6 NC_002512.2 + 104638 0.71 0.86057
Target:  5'- gAGGGGGAGGGCGGCGc-GAaCGAgGg -3'
miRNA:   3'- -UCCCCUUCCUGCUGCuaCUaGCUgUu -5'
9154 3' -53.6 NC_002512.2 + 108373 0.67 0.970319
Target:  5'- uGGGGGAucGGGAgGGCGggGggCGAg-- -3'
miRNA:   3'- -UCCCCU--UCCUgCUGCuaCuaGCUguu -5'
9154 3' -53.6 NC_002512.2 + 108410 0.75 0.648078
Target:  5'- gGGGGGGAGGACGGgGAcGG-CGGCGGg -3'
miRNA:   3'- -UCCCCUUCCUGCUgCUaCUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 109252 0.66 0.985973
Target:  5'- -cGGGAagAGGugGACGuuucucggacagGUGAUCGugAu -3'
miRNA:   3'- ucCCCU--UCCugCUGC------------UACUAGCugUu -5'
9154 3' -53.6 NC_002512.2 + 109800 0.67 0.967337
Target:  5'- cAGGGGGAGGGCGAacagGAUCa---- -3'
miRNA:   3'- -UCCCCUUCCUGCUgcuaCUAGcuguu -5'
9154 3' -53.6 NC_002512.2 + 110274 0.69 0.944943
Target:  5'- gGGGcGGGAGGcgaGCGGCGA-GggCGACAc -3'
miRNA:   3'- -UCC-CCUUCC---UGCUGCUaCuaGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 114216 0.67 0.978091
Target:  5'- gAGGcGGAA-GAUGGCGGUGAugugguccucaUCGACGg -3'
miRNA:   3'- -UCC-CCUUcCUGCUGCUACU-----------AGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 114478 0.71 0.865827
Target:  5'- uGGGGGAAaacuGGACGGCGAcgGAgcugcugucgaagaUCGACGu -3'
miRNA:   3'- -UCCCCUU----CCUGCUGCUa-CU--------------AGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 118131 0.66 0.980312
Target:  5'- cGGGGGAgGGGGCGGgGGcgGAaccgCGACAu -3'
miRNA:   3'- -UCCCCU-UCCUGCUgCUa-CUa---GCUGUu -5'
9154 3' -53.6 NC_002512.2 + 120792 0.66 0.982361
Target:  5'- cGGGGGcggcGGGACGGCGgcGGUCucucggacccggGACGc -3'
miRNA:   3'- uCCCCU----UCCUGCUGCuaCUAG------------CUGUu -5'
9154 3' -53.6 NC_002512.2 + 121793 0.66 0.987552
Target:  5'- cGGGGAcgccgaaGACGACGAcGA-CGACGAc -3'
miRNA:   3'- uCCCCUuc-----CUGCUGCUaCUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 121842 0.84 0.260401
Target:  5'- gGGGGGGAGGACGGCGggGAggaCGGCGg -3'
miRNA:   3'- -UCCCCUUCCUGCUGCuaCUa--GCUGUu -5'
9154 3' -53.6 NC_002512.2 + 121878 0.69 0.940421
Target:  5'- gAGGGGGAGGuCG-CGggGGacgcUCGGCGAc -3'
miRNA:   3'- -UCCCCUUCCuGCuGCuaCU----AGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 122013 0.69 0.930679
Target:  5'- gAGGGGccGGA-GGCGGcgGAUCGGCGc -3'
miRNA:   3'- -UCCCCuuCCUgCUGCUa-CUAGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 122220 0.7 0.902216
Target:  5'- aAGGGGAcGG-CGACGGUGGUCcugaGGCu- -3'
miRNA:   3'- -UCCCCUuCCuGCUGCUACUAG----CUGuu -5'
9154 3' -53.6 NC_002512.2 + 123142 0.69 0.935667
Target:  5'- cGGGGGAcGGGGCGGCGGcgccgcGAUCGcCGc -3'
miRNA:   3'- -UCCCCU-UCCUGCUGCUa-----CUAGCuGUu -5'
9154 3' -53.6 NC_002512.2 + 123394 0.71 0.875319
Target:  5'- cGGGGAGuucuucucGGACGGCGAggcGGUCGAgGu -3'
miRNA:   3'- uCCCCUU--------CCUGCUGCUa--CUAGCUgUu -5'
9154 3' -53.6 NC_002512.2 + 123566 0.72 0.811666
Target:  5'- gAGGGGGAGaGCGACGGgcUGGaCGACGGg -3'
miRNA:   3'- -UCCCCUUCcUGCUGCU--ACUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 123915 0.66 0.98899
Target:  5'- gAGcGGGAAGGugGACGGcgggcUGGcCGuCAGa -3'
miRNA:   3'- -UC-CCCUUCCugCUGCU-----ACUaGCuGUU- -5'
9154 3' -53.6 NC_002512.2 + 126917 0.66 0.983135
Target:  5'- gGGGGGAGgccGGGCuGGCGAUacccgcccgcgccccGGUCGACc- -3'
miRNA:   3'- -UCCCCUU---CCUG-CUGCUA---------------CUAGCUGuu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.