Results 21 - 40 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9154 | 3' | -53.6 | NC_002512.2 | + | 77029 | 1.06 | 0.010936 |
Target: 5'- gAGGGGAAGGACGACGAUGAUCGACAAu -3' miRNA: 3'- -UCCCCUUCCUGCUGCUACUAGCUGUU- -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 77816 | 0.71 | 0.875319 |
Target: 5'- cGGGcgcuAGGACGGCGAUGAccgCGACc- -3' miRNA: 3'- uCCCcu--UCCUGCUGCUACUa--GCUGuu -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 79058 | 0.66 | 0.984246 |
Target: 5'- cGGGGAAGcGCGGCGcgGucgucaCGGCGAc -3' miRNA: 3'- uCCCCUUCcUGCUGCuaCua----GCUGUU- -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 81926 | 0.67 | 0.967337 |
Target: 5'- gAGGGGGAcGACGACGgcGAg-GGCGGa -3' miRNA: 3'- -UCCCCUUcCUGCUGCuaCUagCUGUU- -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 85822 | 0.69 | 0.919996 |
Target: 5'- cAGGGGAcagaaAGGaACGGCGAUGAcgggUCGGUAGg -3' miRNA: 3'- -UCCCCU-----UCC-UGCUGCUACU----AGCUGUU- -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 86251 | 0.68 | 0.953295 |
Target: 5'- cGGGGGAgAGGGCcgaGGCGggGAggGACGAa -3' miRNA: 3'- -UCCCCU-UCCUG---CUGCuaCUagCUGUU- -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 86943 | 0.69 | 0.930679 |
Target: 5'- --cGGAGGaGACGGCGAUGGugacgcugucggUCGACGAa -3' miRNA: 3'- uccCCUUC-CUGCUGCUACU------------AGCUGUU- -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 89875 | 0.71 | 0.882375 |
Target: 5'- cGGGGAcGGGACGGgGAUG-UCGAgGg -3' miRNA: 3'- uCCCCU-UCCUGCUgCUACuAGCUgUu -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 90543 | 0.69 | 0.935667 |
Target: 5'- uGGGGGAggaggagcgggAGGACGAgGgcGAgggCGACGg -3' miRNA: 3'- -UCCCCU-----------UCCUGCUgCuaCUa--GCUGUu -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 92590 | 0.7 | 0.902216 |
Target: 5'- -cGGGAGGGGCGGCGGUcccGAggccggucgCGACGAc -3' miRNA: 3'- ucCCCUUCCUGCUGCUA---CUa--------GCUGUU- -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 96626 | 0.69 | 0.930679 |
Target: 5'- cGGGGGAGGGCGAgGAaaccgCGACc- -3' miRNA: 3'- uCCCCUUCCUGCUgCUacua-GCUGuu -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 97093 | 0.7 | 0.889213 |
Target: 5'- --cGGAAGGACGGCGggGG-CGACGg -3' miRNA: 3'- uccCCUUCCUGCUGCuaCUaGCUGUu -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 97820 | 0.68 | 0.964149 |
Target: 5'- cGGGGAcgcggaguagAGGGCGGCGcgGGggaagcggaggCGACGAc -3' miRNA: 3'- uCCCCU----------UCCUGCUGCuaCUa----------GCUGUU- -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 100063 | 0.66 | 0.980312 |
Target: 5'- cGGGGgcGG-CGGCGccGA-CGACGAg -3' miRNA: 3'- uCCCCuuCCuGCUGCuaCUaGCUGUU- -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 100814 | 0.69 | 0.940421 |
Target: 5'- cGGGGucgaccuGGACGAgGAUGuucAUCGGCGu -3' miRNA: 3'- uCCCCuu-----CCUGCUgCUAC---UAGCUGUu -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 101536 | 0.72 | 0.82869 |
Target: 5'- aGGGGGAAGGA-GACGgcGG-CGGCGGg -3' miRNA: 3'- -UCCCCUUCCUgCUGCuaCUaGCUGUU- -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 102513 | 0.67 | 0.967337 |
Target: 5'- -cGGGGAGGACGAgGAgGAggccagggCGACGg -3' miRNA: 3'- ucCCCUUCCUGCUgCUaCUa-------GCUGUu -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 102692 | 0.7 | 0.895827 |
Target: 5'- -cGGGGAGGACGugGcUGAgcgUGACGu -3' miRNA: 3'- ucCCCUUCCUGCugCuACUa--GCUGUu -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 103033 | 0.69 | 0.940421 |
Target: 5'- -cGGGAagAGGACGACGgcGAcgaccgCGACGAg -3' miRNA: 3'- ucCCCU--UCCUGCUGCuaCUa-----GCUGUU- -5' |
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9154 | 3' | -53.6 | NC_002512.2 | + | 103407 | 0.68 | 0.957133 |
Target: 5'- cGGGGAuccGGGCGACGc-GA-CGACGAc -3' miRNA: 3'- uCCCCUu--CCUGCUGCuaCUaGCUGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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