miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9154 3' -53.6 NC_002512.2 + 77029 1.06 0.010936
Target:  5'- gAGGGGAAGGACGACGAUGAUCGACAAu -3'
miRNA:   3'- -UCCCCUUCCUGCUGCUACUAGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 77816 0.71 0.875319
Target:  5'- cGGGcgcuAGGACGGCGAUGAccgCGACc- -3'
miRNA:   3'- uCCCcu--UCCUGCUGCUACUa--GCUGuu -5'
9154 3' -53.6 NC_002512.2 + 79058 0.66 0.984246
Target:  5'- cGGGGAAGcGCGGCGcgGucgucaCGGCGAc -3'
miRNA:   3'- uCCCCUUCcUGCUGCuaCua----GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 81926 0.67 0.967337
Target:  5'- gAGGGGGAcGACGACGgcGAg-GGCGGa -3'
miRNA:   3'- -UCCCCUUcCUGCUGCuaCUagCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 85822 0.69 0.919996
Target:  5'- cAGGGGAcagaaAGGaACGGCGAUGAcgggUCGGUAGg -3'
miRNA:   3'- -UCCCCU-----UCC-UGCUGCUACU----AGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 86251 0.68 0.953295
Target:  5'- cGGGGGAgAGGGCcgaGGCGggGAggGACGAa -3'
miRNA:   3'- -UCCCCU-UCCUG---CUGCuaCUagCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 86943 0.69 0.930679
Target:  5'- --cGGAGGaGACGGCGAUGGugacgcugucggUCGACGAa -3'
miRNA:   3'- uccCCUUC-CUGCUGCUACU------------AGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 89875 0.71 0.882375
Target:  5'- cGGGGAcGGGACGGgGAUG-UCGAgGg -3'
miRNA:   3'- uCCCCU-UCCUGCUgCUACuAGCUgUu -5'
9154 3' -53.6 NC_002512.2 + 90543 0.69 0.935667
Target:  5'- uGGGGGAggaggagcgggAGGACGAgGgcGAgggCGACGg -3'
miRNA:   3'- -UCCCCU-----------UCCUGCUgCuaCUa--GCUGUu -5'
9154 3' -53.6 NC_002512.2 + 92590 0.7 0.902216
Target:  5'- -cGGGAGGGGCGGCGGUcccGAggccggucgCGACGAc -3'
miRNA:   3'- ucCCCUUCCUGCUGCUA---CUa--------GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 96626 0.69 0.930679
Target:  5'- cGGGGGAGGGCGAgGAaaccgCGACc- -3'
miRNA:   3'- uCCCCUUCCUGCUgCUacua-GCUGuu -5'
9154 3' -53.6 NC_002512.2 + 97093 0.7 0.889213
Target:  5'- --cGGAAGGACGGCGggGG-CGACGg -3'
miRNA:   3'- uccCCUUCCUGCUGCuaCUaGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 97820 0.68 0.964149
Target:  5'- cGGGGAcgcggaguagAGGGCGGCGcgGGggaagcggaggCGACGAc -3'
miRNA:   3'- uCCCCU----------UCCUGCUGCuaCUa----------GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 100063 0.66 0.980312
Target:  5'- cGGGGgcGG-CGGCGccGA-CGACGAg -3'
miRNA:   3'- uCCCCuuCCuGCUGCuaCUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 100814 0.69 0.940421
Target:  5'- cGGGGucgaccuGGACGAgGAUGuucAUCGGCGu -3'
miRNA:   3'- uCCCCuu-----CCUGCUgCUAC---UAGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 101536 0.72 0.82869
Target:  5'- aGGGGGAAGGA-GACGgcGG-CGGCGGg -3'
miRNA:   3'- -UCCCCUUCCUgCUGCuaCUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 102513 0.67 0.967337
Target:  5'- -cGGGGAGGACGAgGAgGAggccagggCGACGg -3'
miRNA:   3'- ucCCCUUCCUGCUgCUaCUa-------GCUGUu -5'
9154 3' -53.6 NC_002512.2 + 102692 0.7 0.895827
Target:  5'- -cGGGGAGGACGugGcUGAgcgUGACGu -3'
miRNA:   3'- ucCCCUUCCUGCugCuACUa--GCUGUu -5'
9154 3' -53.6 NC_002512.2 + 103033 0.69 0.940421
Target:  5'- -cGGGAagAGGACGACGgcGAcgaccgCGACGAg -3'
miRNA:   3'- ucCCCU--UCCUGCUGCuaCUa-----GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 103407 0.68 0.957133
Target:  5'- cGGGGAuccGGGCGACGc-GA-CGACGAc -3'
miRNA:   3'- uCCCCUu--CCUGCUGCuaCUaGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.