miRNA display CGI


Results 1 - 20 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9154 3' -53.6 NC_002512.2 + 48 0.66 0.980312
Target:  5'- gGGGGGggGGcuuuGCGGCGucGGUCG-CGGg -3'
miRNA:   3'- -UCCCCuuCC----UGCUGCuaCUAGCuGUU- -5'
9154 3' -53.6 NC_002512.2 + 76 0.7 0.900323
Target:  5'- aAGGGGggGGAgGugGAUGucaagaaagggcggGUgGGCGGa -3'
miRNA:   3'- -UCCCCuuCCUgCugCUAC--------------UAgCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 4227 0.67 0.970319
Target:  5'- cGGGGAgcGGGACGuCGAgcccCGACGGg -3'
miRNA:   3'- uCCCCU--UCCUGCuGCUacuaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 4444 0.69 0.944943
Target:  5'- cGGGGugccGGGCG-CGggGGUCGGCGu -3'
miRNA:   3'- uCCCCuu--CCUGCuGCuaCUAGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 4522 0.71 0.852888
Target:  5'- gAGGGuGGAGGaggagaagcgGCGACGGUGAggCGGCGc -3'
miRNA:   3'- -UCCC-CUUCC----------UGCUGCUACUa-GCUGUu -5'
9154 3' -53.6 NC_002512.2 + 8126 0.68 0.960749
Target:  5'- uGGGGc-GGAUGGCGAccUGAUUGAgGAa -3'
miRNA:   3'- uCCCCuuCCUGCUGCU--ACUAGCUgUU- -5'
9154 3' -53.6 NC_002512.2 + 11469 0.7 0.902216
Target:  5'- aAGGGGcggagaccgcGAGGACGACGAcgacgGAgaggaCGACGAg -3'
miRNA:   3'- -UCCCC----------UUCCUGCUGCUa----CUa----GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 11736 0.69 0.939956
Target:  5'- cGGGGAcgaggccGGGAgCGACGAcGA-CGACGAc -3'
miRNA:   3'- uCCCCU-------UCCU-GCUGCUaCUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 11855 0.73 0.775762
Target:  5'- cGGGGAGGGACGcggaggaccccuACGAggUGGUgGACAu -3'
miRNA:   3'- uCCCCUUCCUGC------------UGCU--ACUAgCUGUu -5'
9154 3' -53.6 NC_002512.2 + 13984 0.71 0.868049
Target:  5'- cGGGGAAGGGgGACGggGG--GACGAg -3'
miRNA:   3'- uCCCCUUCCUgCUGCuaCUagCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 15828 0.66 0.982361
Target:  5'- gAGGGGucguaGAGGuagACGGCGGUGAcgGGCGAg -3'
miRNA:   3'- -UCCCC-----UUCC---UGCUGCUACUagCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 20894 0.66 0.985973
Target:  5'- cGGGGGAAGaGGCG-CGAgGAcaggCGAUAAc -3'
miRNA:   3'- -UCCCCUUC-CUGCuGCUaCUa---GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 24265 0.73 0.794001
Target:  5'- cGGGcaGGAAGGACGGCGgcGA-CGGCAu -3'
miRNA:   3'- -UCC--CCUUCCUGCUGCuaCUaGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 38100 0.8 0.390868
Target:  5'- cGGGGAAaGACGACGAUGAUgaUGACGAg -3'
miRNA:   3'- uCCCCUUcCUGCUGCUACUA--GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 39557 0.69 0.930679
Target:  5'- -cGGGAcggugccaAGGGCGGCGAcGggCGACAAg -3'
miRNA:   3'- ucCCCU--------UCCUGCUGCUaCuaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 56991 0.69 0.919996
Target:  5'- cGGGGGAcagccguGGGCGGCcg-GGUCGGCGGu -3'
miRNA:   3'- -UCCCCUu------CCUGCUGcuaCUAGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 59365 0.67 0.967337
Target:  5'- cGGGGAAGaGaACGugGcgGAgaugcgCGACAu -3'
miRNA:   3'- uCCCCUUC-C-UGCugCuaCUa-----GCUGUu -5'
9154 3' -53.6 NC_002512.2 + 63813 0.66 0.982361
Target:  5'- cGGGGuacauguccAGGACGACGGUGccCGcGCAGa -3'
miRNA:   3'- uCCCCu--------UCCUGCUGCUACuaGC-UGUU- -5'
9154 3' -53.6 NC_002512.2 + 75062 0.68 0.960749
Target:  5'- cGGGGGAGaccGGGCGGCGAc-GUCGAgGc -3'
miRNA:   3'- -UCCCCUU---CCUGCUGCUacUAGCUgUu -5'
9154 3' -53.6 NC_002512.2 + 75551 0.66 0.98899
Target:  5'- uGGcGGAGGACGACGAcgcgGA-CGACu- -3'
miRNA:   3'- uCCcCUUCCUGCUGCUa---CUaGCUGuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.