miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9154 3' -53.6 NC_002512.2 + 77029 1.06 0.010936
Target:  5'- gAGGGGAAGGACGACGAUGAUCGACAAu -3'
miRNA:   3'- -UCCCCUUCCUGCUGCUACUAGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 121842 0.84 0.260401
Target:  5'- gGGGGGGAGGACGGCGggGAggaCGGCGg -3'
miRNA:   3'- -UCCCCUUCCUGCUGCuaCUa--GCUGUu -5'
9154 3' -53.6 NC_002512.2 + 38100 0.8 0.390868
Target:  5'- cGGGGAAaGACGACGAUGAUgaUGACGAg -3'
miRNA:   3'- uCCCCUUcCUGCUGCUACUA--GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 191271 0.78 0.517856
Target:  5'- cGGGGAGGcGGCGACGggGAgggCGGCGGg -3'
miRNA:   3'- uCCCCUUC-CUGCUGCuaCUa--GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 212537 0.77 0.587276
Target:  5'- -cGGGAucgucgacgGGGACGACGAUGA-CGACGAc -3'
miRNA:   3'- ucCCCU---------UCCUGCUGCUACUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 108410 0.75 0.648078
Target:  5'- gGGGGGGAGGACGGgGAcGG-CGGCGGg -3'
miRNA:   3'- -UCCCCUUCCUGCUgCUaCUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 221289 0.75 0.698464
Target:  5'- gAGGGGggGGAgGcCGG-GGUCGGCGGg -3'
miRNA:   3'- -UCCCCuuCCUgCuGCUaCUAGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 226604 0.74 0.728108
Target:  5'- cGGGGGAggagGGGACGGCGAcGcagCGACGGg -3'
miRNA:   3'- -UCCCCU----UCCUGCUGCUaCua-GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 156466 0.74 0.728108
Target:  5'- cGGGGGAcucgGGGGCGGCGGgc-UCGGCGGg -3'
miRNA:   3'- -UCCCCU----UCCUGCUGCUacuAGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 11855 0.73 0.775762
Target:  5'- cGGGGAGGGACGcggaggaccccuACGAggUGGUgGACAu -3'
miRNA:   3'- uCCCCUUCCUGC------------UGCU--ACUAgCUGUu -5'
9154 3' -53.6 NC_002512.2 + 192830 0.73 0.784949
Target:  5'- cGGGGccAGGugGACGA-GGUUGACGGa -3'
miRNA:   3'- uCCCCu-UCCugCUGCUaCUAGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 24265 0.73 0.794001
Target:  5'- cGGGcaGGAAGGACGGCGgcGA-CGGCAu -3'
miRNA:   3'- -UCC--CCUUCCUGCUGCuaCUaGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 200275 0.72 0.802909
Target:  5'- cGGGGAcgAGGACGACGAgccGUCGGa-- -3'
miRNA:   3'- uCCCCU--UCCUGCUGCUac-UAGCUguu -5'
9154 3' -53.6 NC_002512.2 + 201764 0.72 0.806431
Target:  5'- cGGGGGAcgggaGGGACGAgGGUGAgagcgcggacggggCGGCGAc -3'
miRNA:   3'- -UCCCCU-----UCCUGCUgCUACUa-------------GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 123566 0.72 0.811666
Target:  5'- gAGGGGGAGaGCGACGGgcUGGaCGACGGg -3'
miRNA:   3'- -UCCCCUUCcUGCUGCU--ACUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 228901 0.72 0.82869
Target:  5'- cAGGGaGGAGGACGACGcgagagagGA-CGACGAg -3'
miRNA:   3'- -UCCC-CUUCCUGCUGCua------CUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 101536 0.72 0.82869
Target:  5'- aGGGGGAAGGA-GACGgcGG-CGGCGGg -3'
miRNA:   3'- -UCCCCUUCCUgCUGCuaCUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 227751 0.72 0.82869
Target:  5'- cGGGGGAGG-CGACGAccGAacgcUCGACGc -3'
miRNA:   3'- uCCCCUUCCuGCUGCUa-CU----AGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 196411 0.72 0.84501
Target:  5'- cGGGGAcgcggGGGGCGGCGGccgGGUCGGgAGa -3'
miRNA:   3'- uCCCCU-----UCCUGCUGCUa--CUAGCUgUU- -5'
9154 3' -53.6 NC_002512.2 + 4522 0.71 0.852888
Target:  5'- gAGGGuGGAGGaggagaagcgGCGACGGUGAggCGGCGc -3'
miRNA:   3'- -UCCC-CUUCC----------UGCUGCUACUa-GCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.