miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9154 3' -53.6 NC_002512.2 + 204642 0.71 0.86057
Target:  5'- cGGGGAccGGGACGGCGAcgcgcggggGAUCGcCGg -3'
miRNA:   3'- uCCCCU--UCCUGCUGCUa--------CUAGCuGUu -5'
9154 3' -53.6 NC_002512.2 + 225928 0.71 0.86057
Target:  5'- gAGGGGAc-GACGACGAcGA-CGACGAc -3'
miRNA:   3'- -UCCCCUucCUGCUGCUaCUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 104638 0.71 0.86057
Target:  5'- gAGGGGGAGGGCGGCGc-GAaCGAgGg -3'
miRNA:   3'- -UCCCCUUCCUGCUGCuaCUaGCUgUu -5'
9154 3' -53.6 NC_002512.2 + 227541 0.71 0.86057
Target:  5'- cGGGGGGAGGAgGGCGGguccgCGACc- -3'
miRNA:   3'- -UCCCCUUCCUgCUGCUacua-GCUGuu -5'
9154 3' -53.6 NC_002512.2 + 114478 0.71 0.865827
Target:  5'- uGGGGGAAaacuGGACGGCGAcgGAgcugcugucgaagaUCGACGu -3'
miRNA:   3'- -UCCCCUU----CCUGCUGCUa-CU--------------AGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 13984 0.71 0.868049
Target:  5'- cGGGGAAGGGgGACGggGG--GACGAg -3'
miRNA:   3'- uCCCCUUCCUgCUGCuaCUagCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 123394 0.71 0.875319
Target:  5'- cGGGGAGuucuucucGGACGGCGAggcGGUCGAgGu -3'
miRNA:   3'- uCCCCUU--------CCUGCUGCUa--CUAGCUgUu -5'
9154 3' -53.6 NC_002512.2 + 77816 0.71 0.875319
Target:  5'- cGGGcgcuAGGACGGCGAUGAccgCGACc- -3'
miRNA:   3'- uCCCcu--UCCUGCUGCUACUa--GCUGuu -5'
9154 3' -53.6 NC_002512.2 + 89875 0.71 0.882375
Target:  5'- cGGGGAcGGGACGGgGAUG-UCGAgGg -3'
miRNA:   3'- uCCCCU-UCCUGCUgCUACuAGCUgUu -5'
9154 3' -53.6 NC_002512.2 + 219796 0.7 0.889213
Target:  5'- cGGGGAcacagauagGGGACGcGCGggGcgCGACAGg -3'
miRNA:   3'- uCCCCU---------UCCUGC-UGCuaCuaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 97093 0.7 0.889213
Target:  5'- --cGGAAGGACGGCGggGG-CGACGg -3'
miRNA:   3'- uccCCUUCCUGCUGCuaCUaGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 102692 0.7 0.895827
Target:  5'- -cGGGGAGGACGugGcUGAgcgUGACGu -3'
miRNA:   3'- ucCCCUUCCUGCugCuACUa--GCUGUu -5'
9154 3' -53.6 NC_002512.2 + 229480 0.7 0.900323
Target:  5'- aAGGGGggGGAgGugGAUGucaagaaagggcggGUgGGCGGa -3'
miRNA:   3'- -UCCCCuuCCUgCugCUAC--------------UAgCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 76 0.7 0.900323
Target:  5'- aAGGGGggGGAgGugGAUGucaagaaagggcggGUgGGCGGa -3'
miRNA:   3'- -UCCCCuuCCUgCugCUAC--------------UAgCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 153745 0.7 0.902216
Target:  5'- uGGGGGGGuggucgaaucGGACGACGuc-AUCGACAc -3'
miRNA:   3'- -UCCCCUU----------CCUGCUGCuacUAGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 122220 0.7 0.902216
Target:  5'- aAGGGGAcGG-CGACGGUGGUCcugaGGCu- -3'
miRNA:   3'- -UCCCCUuCCuGCUGCUACUAG----CUGuu -5'
9154 3' -53.6 NC_002512.2 + 11469 0.7 0.902216
Target:  5'- aAGGGGcggagaccgcGAGGACGACGAcgacgGAgaggaCGACGAg -3'
miRNA:   3'- -UCCCC----------UUCCUGCUGCUa----CUa----GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 92590 0.7 0.902216
Target:  5'- -cGGGAGGGGCGGCGGUcccGAggccggucgCGACGAc -3'
miRNA:   3'- ucCCCUUCCUGCUGCUA---CUa--------GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 85822 0.69 0.919996
Target:  5'- cAGGGGAcagaaAGGaACGGCGAUGAcgggUCGGUAGg -3'
miRNA:   3'- -UCCCCU-----UCC-UGCUGCUACU----AGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 56991 0.69 0.919996
Target:  5'- cGGGGGAcagccguGGGCGGCcg-GGUCGGCGGu -3'
miRNA:   3'- -UCCCCUu------CCUGCUGcuaCUAGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.