miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9154 3' -53.6 NC_002512.2 + 15828 0.66 0.982361
Target:  5'- gAGGGGucguaGAGGuagACGGCGGUGAcgGGCGAg -3'
miRNA:   3'- -UCCCC-----UUCC---UGCUGCUACUagCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 120792 0.66 0.982361
Target:  5'- cGGGGGcggcGGGACGGCGgcGGUCucucggacccggGACGc -3'
miRNA:   3'- uCCCCU----UCCUGCUGCuaCUAG------------CUGUu -5'
9154 3' -53.6 NC_002512.2 + 63813 0.66 0.982361
Target:  5'- cGGGGuacauguccAGGACGACGGUGccCGcGCAGa -3'
miRNA:   3'- uCCCCu--------UCCUGCUGCUACuaGC-UGUU- -5'
9154 3' -53.6 NC_002512.2 + 118131 0.66 0.980312
Target:  5'- cGGGGGAgGGGGCGGgGGcgGAaccgCGACAu -3'
miRNA:   3'- -UCCCCU-UCCUGCUgCUa-CUa---GCUGUu -5'
9154 3' -53.6 NC_002512.2 + 48 0.66 0.980312
Target:  5'- gGGGGGggGGcuuuGCGGCGucGGUCG-CGGg -3'
miRNA:   3'- -UCCCCuuCC----UGCUGCuaCUAGCuGUU- -5'
9154 3' -53.6 NC_002512.2 + 147670 0.66 0.980312
Target:  5'- cGGGGgcGcGACGACGggGAUggugUGAUAAu -3'
miRNA:   3'- uCCCCuuC-CUGCUGCuaCUA----GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 100063 0.66 0.980312
Target:  5'- cGGGGgcGG-CGGCGccGA-CGACGAg -3'
miRNA:   3'- uCCCCuuCCuGCUGCuaCUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 228475 0.66 0.980312
Target:  5'- aGGGGGAccgagGGGACcgaaGACGcgGAggGGCGAg -3'
miRNA:   3'- -UCCCCU-----UCCUG----CUGCuaCUagCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 132924 0.66 0.980312
Target:  5'- cGGGcGGAAgacgcGGACGACGGUcgGcgCGACGc -3'
miRNA:   3'- -UCC-CCUU-----CCUGCUGCUA--CuaGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 229452 0.66 0.980312
Target:  5'- gGGGGGggGGcuuuGCGGCGucGGUCG-CGGg -3'
miRNA:   3'- -UCCCCuuCC----UGCUGCuaCUAGCuGUU- -5'
9154 3' -53.6 NC_002512.2 + 114216 0.67 0.978091
Target:  5'- gAGGcGGAA-GAUGGCGGUGAugugguccucaUCGACGg -3'
miRNA:   3'- -UCC-CCUUcCUGCUGCUACU-----------AGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 164589 0.67 0.978091
Target:  5'- cGGGGAGGacgcGGCGGCGAUGcUCagGGCGu -3'
miRNA:   3'- uCCCCUUC----CUGCUGCUACuAG--CUGUu -5'
9154 3' -53.6 NC_002512.2 + 131630 0.67 0.978091
Target:  5'- cGGGGGcAAGGACGggaaguACGggGuccgCGACGAg -3'
miRNA:   3'- -UCCCC-UUCCUGC------UGCuaCua--GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 228949 0.67 0.975689
Target:  5'- gAGGGGggGaGACGGCGGaGAggaaCGAa-- -3'
miRNA:   3'- -UCCCCuuC-CUGCUGCUaCUa---GCUguu -5'
9154 3' -53.6 NC_002512.2 + 192465 0.67 0.975689
Target:  5'- cGGGGAGGGcAUGuCG--GAUCGACGc -3'
miRNA:   3'- uCCCCUUCC-UGCuGCuaCUAGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 196174 0.67 0.975689
Target:  5'- gAGGGGcgagcccgaGGGGGCGACGGccgGGUCccuGGCGAg -3'
miRNA:   3'- -UCCCC---------UUCCUGCUGCUa--CUAG---CUGUU- -5'
9154 3' -53.6 NC_002512.2 + 150041 0.67 0.973101
Target:  5'- gAGGGGGccgGGGACGACGGgg--CGGgAGg -3'
miRNA:   3'- -UCCCCU---UCCUGCUGCUacuaGCUgUU- -5'
9154 3' -53.6 NC_002512.2 + 200360 0.67 0.973101
Target:  5'- gGGGGGAcGGGGCGgGgGGUGAggGGCGGg -3'
miRNA:   3'- -UCCCCU-UCCUGC-UgCUACUagCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 108373 0.67 0.970319
Target:  5'- uGGGGGAucGGGAgGGCGggGggCGAg-- -3'
miRNA:   3'- -UCCCCU--UCCUgCUGCuaCuaGCUguu -5'
9154 3' -53.6 NC_002512.2 + 227829 0.67 0.970319
Target:  5'- -cGGGAagGGGACGugGA-GA-CGACGAc -3'
miRNA:   3'- ucCCCU--UCCUGCugCUaCUaGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.