miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9154 3' -53.6 NC_002512.2 + 38100 0.8 0.390868
Target:  5'- cGGGGAAaGACGACGAUGAUgaUGACGAg -3'
miRNA:   3'- uCCCCUUcCUGCUGCUACUA--GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 11736 0.69 0.939956
Target:  5'- cGGGGAcgaggccGGGAgCGACGAcGA-CGACGAc -3'
miRNA:   3'- uCCCCU-------UCCU-GCUGCUaCUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 123142 0.69 0.935667
Target:  5'- cGGGGGAcGGGGCGGCGGcgccgcGAUCGcCGc -3'
miRNA:   3'- -UCCCCU-UCCUGCUGCUa-----CUAGCuGUu -5'
9154 3' -53.6 NC_002512.2 + 86943 0.69 0.930679
Target:  5'- --cGGAGGaGACGGCGAUGGugacgcugucggUCGACGAa -3'
miRNA:   3'- uccCCUUC-CUGCUGCUACU------------AGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 122013 0.69 0.930679
Target:  5'- gAGGGGccGGA-GGCGGcgGAUCGGCGc -3'
miRNA:   3'- -UCCCCuuCCUgCUGCUa-CUAGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 56991 0.69 0.919996
Target:  5'- cGGGGGAcagccguGGGCGGCcg-GGUCGGCGGu -3'
miRNA:   3'- -UCCCCUu------CCUGCUGcuaCUAGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 153745 0.7 0.902216
Target:  5'- uGGGGGGGuggucgaaucGGACGACGuc-AUCGACAc -3'
miRNA:   3'- -UCCCCUU----------CCUGCUGCuacUAGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 11469 0.7 0.902216
Target:  5'- aAGGGGcggagaccgcGAGGACGACGAcgacgGAgaggaCGACGAg -3'
miRNA:   3'- -UCCCC----------UUCCUGCUGCUa----CUa----GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 89875 0.71 0.882375
Target:  5'- cGGGGAcGGGACGGgGAUG-UCGAgGg -3'
miRNA:   3'- uCCCCU-UCCUGCUgCUACuAGCUgUu -5'
9154 3' -53.6 NC_002512.2 + 77816 0.71 0.875319
Target:  5'- cGGGcgcuAGGACGGCGAUGAccgCGACc- -3'
miRNA:   3'- uCCCcu--UCCUGCUGCUACUa--GCUGuu -5'
9154 3' -53.6 NC_002512.2 + 123394 0.71 0.875319
Target:  5'- cGGGGAGuucuucucGGACGGCGAggcGGUCGAgGu -3'
miRNA:   3'- uCCCCUU--------CCUGCUGCUa--CUAGCUgUu -5'
9154 3' -53.6 NC_002512.2 + 13984 0.71 0.868049
Target:  5'- cGGGGAAGGGgGACGggGG--GACGAg -3'
miRNA:   3'- uCCCCUUCCUgCUGCuaCUagCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 4522 0.71 0.852888
Target:  5'- gAGGGuGGAGGaggagaagcgGCGACGGUGAggCGGCGc -3'
miRNA:   3'- -UCCC-CUUCC----------UGCUGCUACUa-GCUGUu -5'
9154 3' -53.6 NC_002512.2 + 228901 0.72 0.82869
Target:  5'- cAGGGaGGAGGACGACGcgagagagGA-CGACGAg -3'
miRNA:   3'- -UCCC-CUUCCUGCUGCua------CUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 101536 0.72 0.82869
Target:  5'- aGGGGGAAGGA-GACGgcGG-CGGCGGg -3'
miRNA:   3'- -UCCCCUUCCUgCUGCuaCUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 123566 0.72 0.811666
Target:  5'- gAGGGGGAGaGCGACGGgcUGGaCGACGGg -3'
miRNA:   3'- -UCCCCUUCcUGCUGCU--ACUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 24265 0.73 0.794001
Target:  5'- cGGGcaGGAAGGACGGCGgcGA-CGGCAu -3'
miRNA:   3'- -UCC--CCUUCCUGCUGCuaCUaGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 11855 0.73 0.775762
Target:  5'- cGGGGAGGGACGcggaggaccccuACGAggUGGUgGACAu -3'
miRNA:   3'- uCCCCUUCCUGC------------UGCU--ACUAgCUGUu -5'
9154 3' -53.6 NC_002512.2 + 108410 0.75 0.648078
Target:  5'- gGGGGGGAGGACGGgGAcGG-CGGCGGg -3'
miRNA:   3'- -UCCCCUUCCUGCUgCUaCUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 121842 0.84 0.260401
Target:  5'- gGGGGGGAGGACGGCGggGAggaCGGCGg -3'
miRNA:   3'- -UCCCCUUCCUGCUGCuaCUa--GCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.