miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9154 3' -53.6 NC_002512.2 + 131630 0.67 0.978091
Target:  5'- cGGGGGcAAGGACGggaaguACGggGuccgCGACGAg -3'
miRNA:   3'- -UCCCC-UUCCUGC------UGCuaCua--GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 228949 0.67 0.975689
Target:  5'- gAGGGGggGaGACGGCGGaGAggaaCGAa-- -3'
miRNA:   3'- -UCCCCuuC-CUGCUGCUaCUa---GCUguu -5'
9154 3' -53.6 NC_002512.2 + 227829 0.67 0.970319
Target:  5'- -cGGGAagGGGACGugGA-GA-CGACGAc -3'
miRNA:   3'- ucCCCU--UCCUGCugCUaCUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 108373 0.67 0.970319
Target:  5'- uGGGGGAucGGGAgGGCGggGggCGAg-- -3'
miRNA:   3'- -UCCCCU--UCCUgCUGCuaCuaGCUguu -5'
9154 3' -53.6 NC_002512.2 + 4227 0.67 0.970319
Target:  5'- cGGGGAgcGGGACGuCGAgcccCGACGGg -3'
miRNA:   3'- uCCCCU--UCCUGCuGCUacuaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 59365 0.67 0.967337
Target:  5'- cGGGGAAGaGaACGugGcgGAgaugcgCGACAu -3'
miRNA:   3'- uCCCCUUC-C-UGCugCuaCUa-----GCUGUu -5'
9154 3' -53.6 NC_002512.2 + 81926 0.67 0.967337
Target:  5'- gAGGGGGAcGACGACGgcGAg-GGCGGa -3'
miRNA:   3'- -UCCCCUUcCUGCUGCuaCUagCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 109800 0.67 0.967337
Target:  5'- cAGGGGGAGGGCGAacagGAUCa---- -3'
miRNA:   3'- -UCCCCUUCCUGCUgcuaCUAGcuguu -5'
9154 3' -53.6 NC_002512.2 + 8126 0.68 0.960749
Target:  5'- uGGGGc-GGAUGGCGAccUGAUUGAgGAa -3'
miRNA:   3'- uCCCCuuCCUGCUGCU--ACUAGCUgUU- -5'
9154 3' -53.6 NC_002512.2 + 219946 0.68 0.964149
Target:  5'- cGGGGGAGGGugGAUcccccgGGUCGcGCGc -3'
miRNA:   3'- -UCCCCUUCCugCUGcua---CUAGC-UGUu -5'
9154 3' -53.6 NC_002512.2 + 97820 0.68 0.964149
Target:  5'- cGGGGAcgcggaguagAGGGCGGCGcgGGggaagcggaggCGACGAc -3'
miRNA:   3'- uCCCCU----------UCCUGCUGCuaCUa----------GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 86251 0.68 0.953295
Target:  5'- cGGGGGAgAGGGCcgaGGCGggGAggGACGAa -3'
miRNA:   3'- -UCCCCU-UCCUG---CUGCuaCUagCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 149349 0.68 0.957133
Target:  5'- gAGGaGGAagAGGACGACGGggGAgagGACGAg -3'
miRNA:   3'- -UCC-CCU--UCCUGCUGCUa-CUag-CUGUU- -5'
9154 3' -53.6 NC_002512.2 + 167228 0.68 0.964149
Target:  5'- uGGGGGuGAGuGACgguGACGAUGGUgGACu- -3'
miRNA:   3'- -UCCCC-UUC-CUG---CUGCUACUAgCUGuu -5'
9154 3' -53.6 NC_002512.2 + 154571 0.68 0.964149
Target:  5'- gGGGGGGcAGGAuaaCGGCGA-GggCGACGg -3'
miRNA:   3'- -UCCCCU-UCCU---GCUGCUaCuaGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 75062 0.68 0.960749
Target:  5'- cGGGGGAGaccGGGCGGCGAc-GUCGAgGc -3'
miRNA:   3'- -UCCCCUU---CCUGCUGCUacUAGCUgUu -5'
9154 3' -53.6 NC_002512.2 + 103407 0.68 0.957133
Target:  5'- cGGGGAuccGGGCGACGc-GA-CGACGAc -3'
miRNA:   3'- uCCCCUu--CCUGCUGCuaCUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 131048 0.68 0.953295
Target:  5'- cGGGGGAGGACGGCGccgcgccgGAggcCGAUc- -3'
miRNA:   3'- uCCCCUUCCUGCUGCua------CUa--GCUGuu -5'
9154 3' -53.6 NC_002512.2 + 110274 0.69 0.944943
Target:  5'- gGGGcGGGAGGcgaGCGGCGA-GggCGACAc -3'
miRNA:   3'- -UCC-CCUUCC---UGCUGCUaCuaGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 4444 0.69 0.944943
Target:  5'- cGGGGugccGGGCG-CGggGGUCGGCGu -3'
miRNA:   3'- uCCCCuu--CCUGCuGCuaCUAGCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.