Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9158 | 5' | -48.9 | NC_002512.2 | + | 75977 | 1.05 | 0.03574 |
Target: 5'- gCACGGAACCGUUCAUCGACUCGAAAUu -3' miRNA: 3'- -GUGCCUUGGCAAGUAGCUGAGCUUUA- -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 169842 | 0.77 | 0.83066 |
Target: 5'- aCACGGGGCCGUagCA-CGGCUCGAu-- -3' miRNA: 3'- -GUGCCUUGGCAa-GUaGCUGAGCUuua -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 106635 | 0.77 | 0.85538 |
Target: 5'- uGCGGcGCCGgUCGUCGAgCUCGAAGa -3' miRNA: 3'- gUGCCuUGGCaAGUAGCU-GAGCUUUa -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 113760 | 0.75 | 0.905442 |
Target: 5'- uCAUGGAGCCGaccagUCGUCGAuCUCGGGc- -3' miRNA: 3'- -GUGCCUUGGCa----AGUAGCU-GAGCUUua -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 107230 | 0.74 | 0.952394 |
Target: 5'- cCGCGGucACCG-UCGUcCGGCUCGAAAc -3' miRNA: 3'- -GUGCCu-UGGCaAGUA-GCUGAGCUUUa -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 124897 | 0.72 | 0.97785 |
Target: 5'- uCACGGcGACCGUUCGgcgUCGACUacccguaCGAGAg -3' miRNA: 3'- -GUGCC-UUGGCAAGU---AGCUGA-------GCUUUa -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 106121 | 0.71 | 0.984212 |
Target: 5'- gGCGGAacaccggGCCGUUCGUCaGGCUCa---- -3' miRNA: 3'- gUGCCU-------UGGCAAGUAG-CUGAGcuuua -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 203981 | 0.7 | 0.991724 |
Target: 5'- uGCGGuuCCGUUa--CGACUCGAAAg -3' miRNA: 3'- gUGCCuuGGCAAguaGCUGAGCUUUa -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 74598 | 0.7 | 0.991725 |
Target: 5'- -cCGGGGCCcucCGUCGGCUCGAGc- -3' miRNA: 3'- guGCCUUGGcaaGUAGCUGAGCUUua -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 199582 | 0.7 | 0.992791 |
Target: 5'- uGCGGuACCGcgggUCGUCGACgCGggGg -3' miRNA: 3'- gUGCCuUGGCa---AGUAGCUGaGCuuUa -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 7753 | 0.7 | 0.993745 |
Target: 5'- gGCGGAGCCGgggcgguaGUCGGCcgCGGAGa -3' miRNA: 3'- gUGCCUUGGCaag-----UAGCUGa-GCUUUa -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 118216 | 0.7 | 0.994595 |
Target: 5'- gGCGGAcgaGaUCAUCGGCUCGAAc- -3' miRNA: 3'- gUGCCUuggCaAGUAGCUGAGCUUua -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 14545 | 0.7 | 0.994595 |
Target: 5'- gACGGAGCCGggCA-CGAUccggUCGAGGa -3' miRNA: 3'- gUGCCUUGGCaaGUaGCUG----AGCUUUa -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 187840 | 0.7 | 0.994595 |
Target: 5'- -cCGGAGCCaGUUCGUCGGCaaGAu-- -3' miRNA: 3'- guGCCUUGG-CAAGUAGCUGagCUuua -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 32576 | 0.7 | 0.994595 |
Target: 5'- cCGCGGGuGCCGgg-GUCGugUCGGAAa -3' miRNA: 3'- -GUGCCU-UGGCaagUAGCugAGCUUUa -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 75163 | 0.7 | 0.994595 |
Target: 5'- cCGCGGAcgcaacGCCGUUCcGUCGcgccGCUCGAc-- -3' miRNA: 3'- -GUGCCU------UGGCAAG-UAGC----UGAGCUuua -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 209436 | 0.69 | 0.995349 |
Target: 5'- gCGCGGAugACCG-UCAUCGGC-CGGc-- -3' miRNA: 3'- -GUGCCU--UGGCaAGUAGCUGaGCUuua -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 16829 | 0.69 | 0.996015 |
Target: 5'- cCGCGGGGCUGggCAgggCGAuCUCGAu-- -3' miRNA: 3'- -GUGCCUUGGCaaGUa--GCU-GAGCUuua -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 88109 | 0.69 | 0.996015 |
Target: 5'- cCGCGGGGCUGaUCAcggucagggUCGACUCGucGUa -3' miRNA: 3'- -GUGCCUUGGCaAGU---------AGCUGAGCuuUA- -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 183660 | 0.69 | 0.996601 |
Target: 5'- gACGGAGaucuacCCGUUCGUCGuCcCGAAAg -3' miRNA: 3'- gUGCCUU------GGCAAGUAGCuGaGCUUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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