miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9158 5' -48.9 NC_002512.2 + 7753 0.7 0.993745
Target:  5'- gGCGGAGCCGgggcgguaGUCGGCcgCGGAGa -3'
miRNA:   3'- gUGCCUUGGCaag-----UAGCUGa-GCUUUa -5'
9158 5' -48.9 NC_002512.2 + 12584 0.66 0.99987
Target:  5'- gGCGGAGCCGaUCAUcuccCGGCgcgCGGu-- -3'
miRNA:   3'- gUGCCUUGGCaAGUA----GCUGa--GCUuua -5'
9158 5' -48.9 NC_002512.2 + 14545 0.7 0.994595
Target:  5'- gACGGAGCCGggCA-CGAUccggUCGAGGa -3'
miRNA:   3'- gUGCCUUGGCaaGUaGCUG----AGCUUUa -5'
9158 5' -48.9 NC_002512.2 + 16829 0.69 0.996015
Target:  5'- cCGCGGGGCUGggCAgggCGAuCUCGAu-- -3'
miRNA:   3'- -GUGCCUUGGCaaGUa--GCU-GAGCUuua -5'
9158 5' -48.9 NC_002512.2 + 30316 0.67 0.999202
Target:  5'- cCGCGGuACCGcacgagucugUUCAUCGACgcgCGAc-- -3'
miRNA:   3'- -GUGCCuUGGC----------AAGUAGCUGa--GCUuua -5'
9158 5' -48.9 NC_002512.2 + 31699 0.66 0.999833
Target:  5'- aCGCGGAcCUGUUCGcCGACgUGGAGg -3'
miRNA:   3'- -GUGCCUuGGCAAGUaGCUGaGCUUUa -5'
9158 5' -48.9 NC_002512.2 + 32576 0.7 0.994595
Target:  5'- cCGCGGGuGCCGgg-GUCGugUCGGAAa -3'
miRNA:   3'- -GUGCCU-UGGCaagUAGCugAGCUUUa -5'
9158 5' -48.9 NC_002512.2 + 46011 0.69 0.997561
Target:  5'- aACGGAACgG-UCGUCGugUCGcuGAAUc -3'
miRNA:   3'- gUGCCUUGgCaAGUAGCugAGC--UUUA- -5'
9158 5' -48.9 NC_002512.2 + 74598 0.7 0.991725
Target:  5'- -cCGGGGCCcucCGUCGGCUCGAGc- -3'
miRNA:   3'- guGCCUUGGcaaGUAGCUGAGCUUua -5'
9158 5' -48.9 NC_002512.2 + 75163 0.7 0.994595
Target:  5'- cCGCGGAcgcaacGCCGUUCcGUCGcgccGCUCGAc-- -3'
miRNA:   3'- -GUGCCU------UGGCAAG-UAGC----UGAGCUuua -5'
9158 5' -48.9 NC_002512.2 + 75977 1.05 0.03574
Target:  5'- gCACGGAACCGUUCAUCGACUCGAAAUu -3'
miRNA:   3'- -GUGCCUUGGCAAGUAGCUGAGCUUUA- -5'
9158 5' -48.9 NC_002512.2 + 77444 0.67 0.99935
Target:  5'- uCACGGAcgACCGagCGUCGAUUCc---- -3'
miRNA:   3'- -GUGCCU--UGGCaaGUAGCUGAGcuuua -5'
9158 5' -48.9 NC_002512.2 + 88109 0.69 0.996015
Target:  5'- cCGCGGGGCUGaUCAcggucagggUCGACUCGucGUa -3'
miRNA:   3'- -GUGCCUUGGCaAGU---------AGCUGAGCuuUA- -5'
9158 5' -48.9 NC_002512.2 + 99325 0.66 0.999788
Target:  5'- uCACGGucCUGUaCGUCGuCUCGGAc- -3'
miRNA:   3'- -GUGCCuuGGCAaGUAGCuGAGCUUua -5'
9158 5' -48.9 NC_002512.2 + 99821 0.66 0.9999
Target:  5'- -uCGGGACCGUccagggacgcgUCAUUGACUuuauugaauaCGGAAUa -3'
miRNA:   3'- guGCCUUGGCA-----------AGUAGCUGA----------GCUUUA- -5'
9158 5' -48.9 NC_002512.2 + 106121 0.71 0.984212
Target:  5'- gGCGGAacaccggGCCGUUCGUCaGGCUCa---- -3'
miRNA:   3'- gUGCCU-------UGGCAAGUAG-CUGAGcuuua -5'
9158 5' -48.9 NC_002512.2 + 106635 0.77 0.85538
Target:  5'- uGCGGcGCCGgUCGUCGAgCUCGAAGa -3'
miRNA:   3'- gUGCCuUGGCaAGUAGCU-GAGCUUUa -5'
9158 5' -48.9 NC_002512.2 + 106784 0.67 0.99935
Target:  5'- gCGCGGGACgGUUCcgCcggacccGCUCGAAGa -3'
miRNA:   3'- -GUGCCUUGgCAAGuaGc------UGAGCUUUa -5'
9158 5' -48.9 NC_002512.2 + 107230 0.74 0.952394
Target:  5'- cCGCGGucACCG-UCGUcCGGCUCGAAAc -3'
miRNA:   3'- -GUGCCu-UGGCaAGUA-GCUGAGCUUUa -5'
9158 5' -48.9 NC_002512.2 + 113760 0.75 0.905442
Target:  5'- uCAUGGAGCCGaccagUCGUCGAuCUCGGGc- -3'
miRNA:   3'- -GUGCCUUGGCa----AGUAGCU-GAGCUUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.