Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9158 | 5' | -48.9 | NC_002512.2 | + | 155272 | 0.66 | 0.9999 |
Target: 5'- uCGCgGGAGCCGagg--CGGCUCGAGc- -3' miRNA: 3'- -GUG-CCUUGGCaaguaGCUGAGCUUua -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 190627 | 0.67 | 0.999576 |
Target: 5'- -uCGGAACUGUcuucgUCAUCGGCgucgucaCGAGAUu -3' miRNA: 3'- guGCCUUGGCA-----AGUAGCUGa------GCUUUA- -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 99325 | 0.66 | 0.999788 |
Target: 5'- uCACGGucCUGUaCGUCGuCUCGGAc- -3' miRNA: 3'- -GUGCCuuGGCAaGUAGCuGAGCUUua -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 131547 | 0.66 | 0.999788 |
Target: 5'- aACGG--CCaGUUCGUCGcGCUCGGGAg -3' miRNA: 3'- gUGCCuuGG-CAAGUAGC-UGAGCUUUa -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 152245 | 0.66 | 0.999788 |
Target: 5'- uGCGGAACgugUCGUCG-CUCGAc-- -3' miRNA: 3'- gUGCCUUGgcaAGUAGCuGAGCUuua -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 31699 | 0.66 | 0.999833 |
Target: 5'- aCGCGGAcCUGUUCGcCGACgUGGAGg -3' miRNA: 3'- -GUGCCUuGGCAAGUaGCUGaGCUUUa -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 156267 | 0.66 | 0.999833 |
Target: 5'- uUACGGAACCGgaguugCAgaggCGACUCc---- -3' miRNA: 3'- -GUGCCUUGGCaa----GUa---GCUGAGcuuua -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 12584 | 0.66 | 0.99987 |
Target: 5'- gGCGGAGCCGaUCAUcuccCGGCgcgCGGu-- -3' miRNA: 3'- gUGCCUUGGCaAGUA----GCUGa--GCUuua -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 228990 | 0.66 | 0.99987 |
Target: 5'- aGCGGAACCGUgg--CGGCgggacuagCGGGAg -3' miRNA: 3'- gUGCCUUGGCAaguaGCUGa-------GCUUUa -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 152305 | 0.67 | 0.999576 |
Target: 5'- --aGGGACCGcUCGgcgUGGCUCGGAc- -3' miRNA: 3'- gugCCUUGGCaAGUa--GCUGAGCUUua -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 77444 | 0.67 | 0.99935 |
Target: 5'- uCACGGAcgACCGagCGUCGAUUCc---- -3' miRNA: 3'- -GUGCCU--UGGCaaGUAGCUGAGcuuua -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 30316 | 0.67 | 0.999202 |
Target: 5'- cCGCGGuACCGcacgagucugUUCAUCGACgcgCGAc-- -3' miRNA: 3'- -GUGCCuUGGC----------AAGUAGCUGa--GCUuua -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 203981 | 0.7 | 0.991724 |
Target: 5'- uGCGGuuCCGUUa--CGACUCGAAAg -3' miRNA: 3'- gUGCCuuGGCAAguaGCUGAGCUUUa -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 7753 | 0.7 | 0.993745 |
Target: 5'- gGCGGAGCCGgggcgguaGUCGGCcgCGGAGa -3' miRNA: 3'- gUGCCUUGGCaag-----UAGCUGa-GCUUUa -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 14545 | 0.7 | 0.994595 |
Target: 5'- gACGGAGCCGggCA-CGAUccggUCGAGGa -3' miRNA: 3'- gUGCCUUGGCaaGUaGCUG----AGCUUUa -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 32576 | 0.7 | 0.994595 |
Target: 5'- cCGCGGGuGCCGgg-GUCGugUCGGAAa -3' miRNA: 3'- -GUGCCU-UGGCaagUAGCugAGCUUUa -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 75163 | 0.7 | 0.994595 |
Target: 5'- cCGCGGAcgcaacGCCGUUCcGUCGcgccGCUCGAc-- -3' miRNA: 3'- -GUGCCU------UGGCAAG-UAGC----UGAGCUuua -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 16829 | 0.69 | 0.996015 |
Target: 5'- cCGCGGGGCUGggCAgggCGAuCUCGAu-- -3' miRNA: 3'- -GUGCCUUGGCaaGUa--GCU-GAGCUuua -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 88109 | 0.69 | 0.996015 |
Target: 5'- cCGCGGGGCUGaUCAcggucagggUCGACUCGucGUa -3' miRNA: 3'- -GUGCCUUGGCaAGU---------AGCUGAGCuuUA- -5' |
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9158 | 5' | -48.9 | NC_002512.2 | + | 128685 | 0.68 | 0.998571 |
Target: 5'- gACGGGGCCGUcgUgAUCGGCaaGggGUc -3' miRNA: 3'- gUGCCUUGGCA--AgUAGCUGagCuuUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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