miRNA display CGI


Results 21 - 40 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9164 3' -53.4 NC_002512.2 + 21221 0.74 0.744974
Target:  5'- cCCCGGGAcGCCGCccggGGCGGAGAcgggGGCGGa -3'
miRNA:   3'- uGGGUCUU-UGGUG----UCGUCUCU----CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 146483 0.74 0.754513
Target:  5'- cACCaCGGAAACCcccACGGCGGGGAcgcGCGGg -3'
miRNA:   3'- -UGG-GUCUUUGG---UGUCGUCUCUc--UGCC- -5'
9164 3' -53.4 NC_002512.2 + 226906 0.74 0.763947
Target:  5'- cACCUcggAGAGACgACGGCGaAGGGGCGGa -3'
miRNA:   3'- -UGGG---UCUUUGgUGUCGUcUCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 28072 0.74 0.763947
Target:  5'- cCCCGGG---CGCGGCGGAGAcGGCGGa -3'
miRNA:   3'- uGGGUCUuugGUGUCGUCUCU-CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 149415 0.73 0.773266
Target:  5'- gGCCgcgaGGGGACCGCGGC--GGGGGCGGg -3'
miRNA:   3'- -UGGg---UCUUUGGUGUCGucUCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 47808 0.73 0.773266
Target:  5'- cGCCCAGAccccggAGCCGCGGCuGAG-GuCGGc -3'
miRNA:   3'- -UGGGUCU------UUGGUGUCGuCUCuCuGCC- -5'
9164 3' -53.4 NC_002512.2 + 165123 0.73 0.773266
Target:  5'- uCCCAGGAGCCACccgcuuugaugAGCAuAGGGACGu -3'
miRNA:   3'- uGGGUCUUUGGUG-----------UCGUcUCUCUGCc -5'
9164 3' -53.4 NC_002512.2 + 41654 0.73 0.800449
Target:  5'- -aCCGGAGACgCACGGUcGAGAGACcuGGg -3'
miRNA:   3'- ugGGUCUUUG-GUGUCGuCUCUCUG--CC- -5'
9164 3' -53.4 NC_002512.2 + 92573 0.73 0.809223
Target:  5'- gGCgCC-GAcGCCGCGGCcgGGAGGGGCGGc -3'
miRNA:   3'- -UG-GGuCUuUGGUGUCG--UCUCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 74808 0.73 0.809223
Target:  5'- cGCCCGGgcACC-CGGCAGcGGcGGCGGa -3'
miRNA:   3'- -UGGGUCuuUGGuGUCGUCuCU-CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 56257 0.73 0.81784
Target:  5'- gACCCGGGGuucGCCGCcGCGGcGGAGGCGc -3'
miRNA:   3'- -UGGGUCUU---UGGUGuCGUC-UCUCUGCc -5'
9164 3' -53.4 NC_002512.2 + 146707 0.73 0.81784
Target:  5'- gGCgaCGGAGACgACGGCGGGGcGGCGGc -3'
miRNA:   3'- -UGg-GUCUUUGgUGUCGUCUCuCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 143717 0.73 0.81784
Target:  5'- cUCCAGcucCCGCAGCAGggccucGGAGGCGGc -3'
miRNA:   3'- uGGGUCuuuGGUGUCGUC------UCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 127087 0.73 0.81784
Target:  5'- uCCCGGAGcggagggcgGCgGCGGCGGcgGGAGAUGGg -3'
miRNA:   3'- uGGGUCUU---------UGgUGUCGUC--UCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 228054 0.73 0.81784
Target:  5'- cGCCCGcGGAcgGCUGCGGCGcGGGAGACGa -3'
miRNA:   3'- -UGGGU-CUU--UGGUGUCGU-CUCUCUGCc -5'
9164 3' -53.4 NC_002512.2 + 147383 0.72 0.826292
Target:  5'- -aCCGGAAACCACGccauGCAGAG-GAcCGGc -3'
miRNA:   3'- ugGGUCUUUGGUGU----CGUCUCuCU-GCC- -5'
9164 3' -53.4 NC_002512.2 + 132829 0.72 0.833752
Target:  5'- cACCCAGcacaccagguaguAGACCACGauGCAGAaGaAGACGGa -3'
miRNA:   3'- -UGGGUC-------------UUUGGUGU--CGUCU-C-UCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 223000 0.72 0.834572
Target:  5'- uGCCgGGGAGCggCACGGCccAGGGACGGg -3'
miRNA:   3'- -UGGgUCUUUG--GUGUCGucUCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 168130 0.72 0.842671
Target:  5'- gGCCCggccgcggcgAGggGCUGgGGguGGGGGGCGGa -3'
miRNA:   3'- -UGGG----------UCuuUGGUgUCguCUCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 164439 0.72 0.850583
Target:  5'- cGCCgGGAAGCCGCucggcgcccucGGCGGGGGcGACGa -3'
miRNA:   3'- -UGGgUCUUUGGUG-----------UCGUCUCU-CUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.