miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9167 3' -51.8 NC_002512.2 + 188126 0.66 0.995568
Target:  5'- aGACGCUGUcGAcAUGguGuucCCUCUCa -3'
miRNA:   3'- gCUGUGGCA-CUuUGCguCua-GGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 133776 0.66 0.995568
Target:  5'- uCGACACCcagGUGGccCGCgAGAUCUUCg- -3'
miRNA:   3'- -GCUGUGG---CACUuuGCG-UCUAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 8748 0.66 0.995568
Target:  5'- uCGACGaCG-GGGACGCGG-UCCUCa- -3'
miRNA:   3'- -GCUGUgGCaCUUUGCGUCuAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 186307 0.66 0.995568
Target:  5'- gCGACGCCGUGGucaucgGCAacGUCCUCa- -3'
miRNA:   3'- -GCUGUGGCACUuug---CGUc-UAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 169184 0.66 0.994859
Target:  5'- ---gACCGUGAAGUGCGGGUCCa--- -3'
miRNA:   3'- gcugUGGCACUUUGCGUCUAGGagag -5'
9167 3' -51.8 NC_002512.2 + 126410 0.66 0.994859
Target:  5'- gGGCGCCGUc-GACGCcg--CCUCUCc -3'
miRNA:   3'- gCUGUGGCAcuUUGCGucuaGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 76026 0.66 0.994859
Target:  5'- aGGCGCCGac-GACGCGGAcgacgccuucUCCUuCUCc -3'
miRNA:   3'- gCUGUGGCacuUUGCGUCU----------AGGA-GAG- -5'
9167 3' -51.8 NC_002512.2 + 177840 0.66 0.994783
Target:  5'- gCGAUACCGUgucgaugGAGGCcaGCAGcUCCUCg- -3'
miRNA:   3'- -GCUGUGGCA-------CUUUG--CGUCuAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 218734 0.67 0.99406
Target:  5'- aCGAC-CCGUcGAGCGCGuGUCCggccCUCg -3'
miRNA:   3'- -GCUGuGGCAcUUUGCGUcUAGGa---GAG- -5'
9167 3' -51.8 NC_002512.2 + 2060 0.67 0.99406
Target:  5'- gCGGCGCCagcgGGAGCGCGGAgUCCa--- -3'
miRNA:   3'- -GCUGUGGca--CUUUGCGUCU-AGGagag -5'
9167 3' -51.8 NC_002512.2 + 15415 0.67 0.99406
Target:  5'- aGACGCCGcggugGAAGCaGUAGAcggCCUCg- -3'
miRNA:   3'- gCUGUGGCa----CUUUG-CGUCUa--GGAGag -5'
9167 3' -51.8 NC_002512.2 + 103426 0.67 0.992577
Target:  5'- aGACGCCGUcgaacgcgucgucccGGuccgAGCGCGGGUCCgaggacgcggCUCg -3'
miRNA:   3'- gCUGUGGCA---------------CU----UUGCGUCUAGGa---------GAG- -5'
9167 3' -51.8 NC_002512.2 + 181066 0.67 0.992164
Target:  5'- -uGCGCCGcGAAccuccuCGC-GAUCCUCUCc -3'
miRNA:   3'- gcUGUGGCaCUUu-----GCGuCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 208390 0.67 0.992164
Target:  5'- cCGACGCUGcGAGGCccgccuGCGGAUgCUCUa -3'
miRNA:   3'- -GCUGUGGCaCUUUG------CGUCUAgGAGAg -5'
9167 3' -51.8 NC_002512.2 + 77049 0.67 0.992164
Target:  5'- uCGACAaucUCGUGgcGCuGCuGAUCCUgCUCg -3'
miRNA:   3'- -GCUGU---GGCACuuUG-CGuCUAGGA-GAG- -5'
9167 3' -51.8 NC_002512.2 + 216053 0.67 0.992164
Target:  5'- gCGACgGgCGUucGggGC-CGGGUCCUCUCu -3'
miRNA:   3'- -GCUG-UgGCA--CuuUGcGUCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 210588 0.67 0.992164
Target:  5'- uCGAC-CCGUucgucCGgAGGUCCUCUCc -3'
miRNA:   3'- -GCUGuGGCAcuuu-GCgUCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 139543 0.67 0.992164
Target:  5'- gGACugCGUGAucacgggcagcACGguGAUCUcCUCg -3'
miRNA:   3'- gCUGugGCACUu----------UGCguCUAGGaGAG- -5'
9167 3' -51.8 NC_002512.2 + 125022 0.67 0.991051
Target:  5'- uCGGCGCCGcccgcuGCGCgAGGUCC-CUCc -3'
miRNA:   3'- -GCUGUGGCacuu--UGCG-UCUAGGaGAG- -5'
9167 3' -51.8 NC_002512.2 + 184204 0.67 0.991051
Target:  5'- uGACuCCccGGAcCGCGGGUUCUCUCu -3'
miRNA:   3'- gCUGuGGcaCUUuGCGUCUAGGAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.