miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9167 3' -51.8 NC_002512.2 + 119184 0.67 0.989816
Target:  5'- aCGACGCuCGUGGAccuGCGCAacGUCUgcaUCUCg -3'
miRNA:   3'- -GCUGUG-GCACUU---UGCGUc-UAGG---AGAG- -5'
9167 3' -51.8 NC_002512.2 + 107240 0.67 0.989686
Target:  5'- gCGGCGCCGUcagcaccGAGugGCGG-UCCgcgUUCa -3'
miRNA:   3'- -GCUGUGGCA-------CUUugCGUCuAGGa--GAG- -5'
9167 3' -51.8 NC_002512.2 + 105870 0.68 0.988453
Target:  5'- gGACGCa--GgcGCGCGGGUCCgUCUCc -3'
miRNA:   3'- gCUGUGgcaCuuUGCGUCUAGG-AGAG- -5'
9167 3' -51.8 NC_002512.2 + 221838 0.68 0.988453
Target:  5'- cCGAC-CCGcgGggGCGCcucgggaccgGGA-CCUCUCg -3'
miRNA:   3'- -GCUGuGGCa-CuuUGCG----------UCUaGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 14832 0.68 0.988453
Target:  5'- aGACGCCGccGAcGACGguGAgcUCCUCg- -3'
miRNA:   3'- gCUGUGGCa-CU-UUGCguCU--AGGAGag -5'
9167 3' -51.8 NC_002512.2 + 114528 0.68 0.988453
Target:  5'- aCGACGCCGgcgucuucACGCcGAUCUUCUg -3'
miRNA:   3'- -GCUGUGGCacuu----UGCGuCUAGGAGAg -5'
9167 3' -51.8 NC_002512.2 + 191810 0.68 0.988453
Target:  5'- gGACACCGggcacUGAcGCGCgcgGGGUCCUUg- -3'
miRNA:   3'- gCUGUGGC-----ACUuUGCG---UCUAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 121736 0.68 0.986951
Target:  5'- gCGACGCCGgagGAGucggagucuucGCGCg---CCUCUCg -3'
miRNA:   3'- -GCUGUGGCa--CUU-----------UGCGucuaGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 220111 0.68 0.986951
Target:  5'- aGGCGuCCGUGAGccgccacgcgggGCgGCGGGUCCggCUCc -3'
miRNA:   3'- gCUGU-GGCACUU------------UG-CGUCUAGGa-GAG- -5'
9167 3' -51.8 NC_002512.2 + 60564 0.68 0.985981
Target:  5'- ---gGCCGUGGAACGCgAuuucuggcuguacgcGAUCCUCUUc -3'
miRNA:   3'- gcugUGGCACUUUGCG-U---------------CUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 128266 0.68 0.985304
Target:  5'- cCGACggguccGCCGUc--ACcCAGAUCCUCUCg -3'
miRNA:   3'- -GCUG------UGGCAcuuUGcGUCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 223315 0.68 0.985304
Target:  5'- uCGACACCGUGAacggucgggagGACG-GGAcCCUCa- -3'
miRNA:   3'- -GCUGUGGCACU-----------UUGCgUCUaGGAGag -5'
9167 3' -51.8 NC_002512.2 + 109739 0.68 0.983503
Target:  5'- ---gGCCG-GuuGCGCGGGUCCUCg- -3'
miRNA:   3'- gcugUGGCaCuuUGCGUCUAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 31568 0.68 0.983503
Target:  5'- gGACGCCGUGAAcgGCcuGAUCCUa-- -3'
miRNA:   3'- gCUGUGGCACUUugCGu-CUAGGAgag -5'
9167 3' -51.8 NC_002512.2 + 159295 0.68 0.98154
Target:  5'- -aACACCGUGAGACGUg---CCUCg- -3'
miRNA:   3'- gcUGUGGCACUUUGCGucuaGGAGag -5'
9167 3' -51.8 NC_002512.2 + 101868 0.68 0.980918
Target:  5'- uCGACGCCGgggcgGGucuguucugccucgGGCGCG--UCCUCUCg -3'
miRNA:   3'- -GCUGUGGCa----CU--------------UUGCGUcuAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 27149 0.69 0.977095
Target:  5'- uGACAUCGUGuc-CGCGGAUgagagcggacCCUUUCg -3'
miRNA:   3'- gCUGUGGCACuuuGCGUCUA----------GGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 41561 0.69 0.977095
Target:  5'- -uGCACgGUGgcGCGCAGGUUCUugacCUCg -3'
miRNA:   3'- gcUGUGgCACuuUGCGUCUAGGA----GAG- -5'
9167 3' -51.8 NC_002512.2 + 220054 0.69 0.974598
Target:  5'- uCGACAuggcuccgcCCGaGAcucuGGCGCGGAUCCUCa- -3'
miRNA:   3'- -GCUGU---------GGCaCU----UUGCGUCUAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 94554 0.69 0.974598
Target:  5'- -aGCGCCGUGAucaGCAGGUUCUUg- -3'
miRNA:   3'- gcUGUGGCACUuugCGUCUAGGAGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.