miRNA display CGI


Results 61 - 80 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9167 3' -51.8 NC_002512.2 + 158926 0.66 0.997656
Target:  5'- aCGGCuuCGgcgGggGCGCcGGcggCCUCUCg -3'
miRNA:   3'- -GCUGugGCa--CuuUGCGuCUa--GGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 159295 0.68 0.98154
Target:  5'- -aACACCGUGAGACGUg---CCUCg- -3'
miRNA:   3'- gcUGUGGCACUUUGCGucuaGGAGag -5'
9167 3' -51.8 NC_002512.2 + 163331 0.77 0.681377
Target:  5'- aGACACUGUcuGGACGguGGUCCUCUUc -3'
miRNA:   3'- gCUGUGGCAc-UUUGCguCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 169184 0.66 0.994859
Target:  5'- ---gACCGUGAAGUGCGGGUCCa--- -3'
miRNA:   3'- gcugUGGCACUUUGCGUCUAGGagag -5'
9167 3' -51.8 NC_002512.2 + 176081 0.71 0.942759
Target:  5'- cCGACACCucGGAGCGCAGcgCCUg-- -3'
miRNA:   3'- -GCUGUGGcaCUUUGCGUCuaGGAgag -5'
9167 3' -51.8 NC_002512.2 + 177840 0.66 0.994783
Target:  5'- gCGAUACCGUgucgaugGAGGCcaGCAGcUCCUCg- -3'
miRNA:   3'- -GCUGUGGCA-------CUUUG--CGUCuAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 181066 0.67 0.992164
Target:  5'- -uGCGCCGcGAAccuccuCGC-GAUCCUCUCc -3'
miRNA:   3'- gcUGUGGCaCUUu-----GCGuCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 184204 0.67 0.991051
Target:  5'- uGACuCCccGGAcCGCGGGUUCUCUCu -3'
miRNA:   3'- gCUGuGGcaCUUuGCGUCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 186243 0.73 0.856131
Target:  5'- gGAC-CCGUGGAACaGCGGAUCCa--- -3'
miRNA:   3'- gCUGuGGCACUUUG-CGUCUAGGagag -5'
9167 3' -51.8 NC_002512.2 + 186307 0.66 0.995568
Target:  5'- gCGACGCCGUGGucaucgGCAacGUCCUCa- -3'
miRNA:   3'- -GCUGUGGCACUuug---CGUc-UAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 188126 0.66 0.995568
Target:  5'- aGACGCUGUcGAcAUGguGuucCCUCUCa -3'
miRNA:   3'- gCUGUGGCA-CUuUGCguCua-GGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 191409 0.66 0.997656
Target:  5'- gGACACCa-GGAugGCAGcAUCCgCUUu -3'
miRNA:   3'- gCUGUGGcaCUUugCGUC-UAGGaGAG- -5'
9167 3' -51.8 NC_002512.2 + 191810 0.68 0.988453
Target:  5'- gGACACCGggcacUGAcGCGCgcgGGGUCCUUg- -3'
miRNA:   3'- gCUGUGGC-----ACUuUGCG---UCUAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 192483 0.74 0.848282
Target:  5'- uCGACGCgCGgacgGGGACGCgcucgAGGUCUUCUCg -3'
miRNA:   3'- -GCUGUG-GCa---CUUUGCG-----UCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 194336 0.66 0.997656
Target:  5'- aCGGUugCGUGGucGCGCacgagggagGGGUCCUCUUc -3'
miRNA:   3'- -GCUGugGCACUu-UGCG---------UCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 208390 0.67 0.992164
Target:  5'- cCGACGCUGcGAGGCccgccuGCGGAUgCUCUa -3'
miRNA:   3'- -GCUGUGGCaCUUUG------CGUCUAgGAGAg -5'
9167 3' -51.8 NC_002512.2 + 210588 0.67 0.992164
Target:  5'- uCGAC-CCGUucgucCGgAGGUCCUCUCc -3'
miRNA:   3'- -GCUGuGGCAcuuu-GCgUCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 216053 0.67 0.992164
Target:  5'- gCGACgGgCGUucGggGC-CGGGUCCUCUCu -3'
miRNA:   3'- -GCUG-UgGCA--CuuUGcGUCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 218734 0.67 0.99406
Target:  5'- aCGAC-CCGUcGAGCGCGuGUCCggccCUCg -3'
miRNA:   3'- -GCUGuGGCAcUUUGCGUcUAGGa---GAG- -5'
9167 3' -51.8 NC_002512.2 + 219878 0.66 0.997656
Target:  5'- aCGAgGCCGgggucgGAGACGagccGAccgcccUCCUCUCg -3'
miRNA:   3'- -GCUgUGGCa-----CUUUGCgu--CU------AGGAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.