miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9167 5' -49.1 NC_002512.2 + 105507 0.65 0.999904
Target:  5'- gGGAGGAcggggggcucuggcuGGACCCCGgcgcccggGGGUCg -3'
miRNA:   3'- -CCUCUU---------------UCUGGGGCaaagaag-CCUAG- -5'
9167 5' -49.1 NC_002512.2 + 88745 0.66 0.99984
Target:  5'- uGAGAAGGACCCCGgccgagcCGGu-- -3'
miRNA:   3'- cCUCUUUCUGGGGCaaagaa-GCCuag -5'
9167 5' -49.1 NC_002512.2 + 134729 0.66 0.999806
Target:  5'- cGGGGGAAGGCUCCGguccUCgacccgcCGGggCg -3'
miRNA:   3'- -CCUCUUUCUGGGGCaa--AGaa-----GCCuaG- -5'
9167 5' -49.1 NC_002512.2 + 87060 0.66 0.999806
Target:  5'- uGGAGAAacAGaACCUuaCGgcgUUCcUCGGGUCg -3'
miRNA:   3'- -CCUCUU--UC-UGGG--GCa--AAGaAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 3776 0.66 0.999806
Target:  5'- aGGAGAcGGACCCgGagUCggacCGGAg- -3'
miRNA:   3'- -CCUCUuUCUGGGgCaaAGaa--GCCUag -5'
9167 5' -49.1 NC_002512.2 + 7902 0.66 0.999742
Target:  5'- uGAGGGAGACgaCCCGgacgaaccUCGGGUCu -3'
miRNA:   3'- cCUCUUUCUG--GGGCaaaga---AGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 192202 0.66 0.999754
Target:  5'- uGGGGAGGACCCgGaccCUUCGGccucuUCg -3'
miRNA:   3'- cCUCUUUCUGGGgCaaaGAAGCCu----AG- -5'
9167 5' -49.1 NC_002512.2 + 123566 0.66 0.999806
Target:  5'- cGGGGAGAG-CCgCCGaaggcgCUgCGGGUCu -3'
miRNA:   3'- -CCUCUUUCuGG-GGCaaa---GAaGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 103649 0.66 0.999848
Target:  5'- cGAGAcGGACCCCGagacgUCuGGUCg -3'
miRNA:   3'- cCUCUuUCUGGGGCaaagaAGcCUAG- -5'
9167 5' -49.1 NC_002512.2 + 122791 0.66 0.999848
Target:  5'- cGAGGGcgccGGGCCCUGg--CggCGGGUCc -3'
miRNA:   3'- cCUCUU----UCUGGGGCaaaGaaGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 79877 0.66 0.999848
Target:  5'- aGGAGGAAGagaGCCCCGgcg---UGGGUUc -3'
miRNA:   3'- -CCUCUUUC---UGGGGCaaagaaGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 153054 0.67 0.99969
Target:  5'- gGGAGc-GGuCCCCGg----UCGGGUCg -3'
miRNA:   3'- -CCUCuuUCuGGGGCaaagaAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 167560 0.67 0.99969
Target:  5'- -cAGggGGugCCCGUcggcUUCUUCccGGUCa -3'
miRNA:   3'- ccUCuuUCugGGGCA----AAGAAGc-CUAG- -5'
9167 5' -49.1 NC_002512.2 + 153029 0.67 0.99969
Target:  5'- gGGAGc-GGuCCCCGg----UCGGGUCg -3'
miRNA:   3'- -CCUCuuUCuGGGGCaaagaAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 153004 0.67 0.99969
Target:  5'- gGGAGc-GGuCCCCGg----UCGGGUCg -3'
miRNA:   3'- -CCUCuuUCuGGGGCaaagaAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 152979 0.67 0.99969
Target:  5'- gGGAGc-GGuCCCCGg----UCGGGUCg -3'
miRNA:   3'- -CCUCuuUCuGGGGCaaagaAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 226801 0.67 0.999403
Target:  5'- cGGAG-AAGAUCUCGUcggCggaCGGGUCg -3'
miRNA:   3'- -CCUCuUUCUGGGGCAaa-Gaa-GCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 132002 0.67 0.999517
Target:  5'- gGGAGAGgggGGAUCUCGcgUCggcgggCGGGUCc -3'
miRNA:   3'- -CCUCUU---UCUGGGGCaaAGaa----GCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 78350 0.67 0.999612
Target:  5'- cGGGAcGGGACCCC---UUUUCGGGUUu -3'
miRNA:   3'- cCUCU-UUCUGGGGcaaAGAAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 42349 0.67 0.99969
Target:  5'- cGAGAcGGACcaggCCCGg--CUUCGGAa- -3'
miRNA:   3'- cCUCUuUCUG----GGGCaaaGAAGCCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.