miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9167 5' -49.1 NC_002512.2 + 55280 1.13 0.013412
Target:  5'- gGGAGAAAGACCCCGUUUCUUCGGAUCu -3'
miRNA:   3'- -CCUCUUUCUGGGGCAAAGAAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 142187 0.77 0.853464
Target:  5'- gGGAGAAGGAUCCgGggUCgugUCGGcgCg -3'
miRNA:   3'- -CCUCUUUCUGGGgCaaAGa--AGCCuaG- -5'
9167 5' -49.1 NC_002512.2 + 88067 0.74 0.937321
Target:  5'- cGGGGAacGAGACCaucuCCGUcgagUUUCGGAUCg -3'
miRNA:   3'- -CCUCU--UUCUGG----GGCAaa--GAAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 102128 0.74 0.937321
Target:  5'- cGGAGggGGACCCUGgccgUCUaCGGccgCg -3'
miRNA:   3'- -CCUCuuUCUGGGGCaa--AGAaGCCua-G- -5'
9167 5' -49.1 NC_002512.2 + 151812 0.73 0.954954
Target:  5'- gGGAGAGAGAagcgCCCGacgUUCcUCGGAUg -3'
miRNA:   3'- -CCUCUUUCUg---GGGCa--AAGaAGCCUAg -5'
9167 5' -49.1 NC_002512.2 + 3703 0.73 0.962361
Target:  5'- cGGAGGucGACCCgGUcgCUcccCGGGUCg -3'
miRNA:   3'- -CCUCUuuCUGGGgCAaaGAa--GCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 130500 0.73 0.962361
Target:  5'- gGGAGuccGGACCCCGacgCUggcggagagcUCGGGUCg -3'
miRNA:   3'- -CCUCuu-UCUGGGGCaaaGA----------AGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 138122 0.73 0.968876
Target:  5'- uGGGGGugaaggcgGAGAUCCCGgaggcgUUCUUCGGGc- -3'
miRNA:   3'- -CCUCU--------UUCUGGGGCa-----AAGAAGCCUag -5'
9167 5' -49.1 NC_002512.2 + 22364 0.71 0.98357
Target:  5'- gGGAGGAcgcGGCCCCGUccucgUCgucggucgCGGAUCc -3'
miRNA:   3'- -CCUCUUu--CUGGGGCAa----AGaa------GCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 130232 0.71 0.98357
Target:  5'- cGGGGAAccucuGGGCCCCGgcgugCUUggugaGGAUCa -3'
miRNA:   3'- -CCUCUU-----UCUGGGGCaaa--GAAg----CCUAG- -5'
9167 5' -49.1 NC_002512.2 + 212631 0.71 0.98539
Target:  5'- cGGAcGAGGGGCCCCGUUaugUCgUCGaGAg- -3'
miRNA:   3'- -CCU-CUUUCUGGGGCAA---AGaAGC-CUag -5'
9167 5' -49.1 NC_002512.2 + 27668 0.71 0.988563
Target:  5'- uGGAGAcgaACCCCGUaUCccgCGGGUCc -3'
miRNA:   3'- -CCUCUuucUGGGGCAaAGaa-GCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 150153 0.69 0.995684
Target:  5'- -aAGAAAGAaaCCCGUUUCUuuUUGGGUUa -3'
miRNA:   3'- ccUCUUUCUg-GGGCAAAGA--AGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 152202 0.69 0.995684
Target:  5'- cGGAGAGuGGACCCCGgucCUggcCGGuUCu -3'
miRNA:   3'- -CCUCUU-UCUGGGGCaaaGAa--GCCuAG- -5'
9167 5' -49.1 NC_002512.2 + 157042 0.69 0.996306
Target:  5'- cGGAGcGAGGACCCCGgcaaggCGGGc- -3'
miRNA:   3'- -CCUC-UUUCUGGGGCaaagaaGCCUag -5'
9167 5' -49.1 NC_002512.2 + 33748 0.69 0.996852
Target:  5'- cGAGGAGcGGCCCUGgaagucCUUCaGGAUCg -3'
miRNA:   3'- cCUCUUU-CUGGGGCaaa---GAAG-CCUAG- -5'
9167 5' -49.1 NC_002512.2 + 211858 0.69 0.996852
Target:  5'- aGGAGAAGGACCUCagcaUCgUCGGcgCc -3'
miRNA:   3'- -CCUCUUUCUGGGGcaa-AGaAGCCuaG- -5'
9167 5' -49.1 NC_002512.2 + 109008 0.69 0.996852
Target:  5'- aGGAGAGGGACCUCGaggggCgggCGGGg- -3'
miRNA:   3'- -CCUCUUUCUGGGGCaaa--Gaa-GCCUag -5'
9167 5' -49.1 NC_002512.2 + 92365 0.69 0.99733
Target:  5'- uGGAGAAGGugcuguCCCCGUUcCUgacgUCGG-UCc -3'
miRNA:   3'- -CCUCUUUCu-----GGGGCAAaGA----AGCCuAG- -5'
9167 5' -49.1 NC_002512.2 + 127854 0.69 0.99733
Target:  5'- cGGAGcgGGAUCCCGUgggCgcgCGGGa- -3'
miRNA:   3'- -CCUCuuUCUGGGGCAaa-Gaa-GCCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.