miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9167 5' -49.1 NC_002512.2 + 88067 0.74 0.937321
Target:  5'- cGGGGAacGAGACCaucuCCGUcgagUUUCGGAUCg -3'
miRNA:   3'- -CCUCU--UUCUGG----GGCAaa--GAAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 87060 0.66 0.999806
Target:  5'- uGGAGAAacAGaACCUuaCGgcgUUCcUCGGGUCg -3'
miRNA:   3'- -CCUCUU--UC-UGGG--GCa--AAGaAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 3776 0.66 0.999806
Target:  5'- aGGAGAcGGACCCgGagUCggacCGGAg- -3'
miRNA:   3'- -CCUCUuUCUGGGgCaaAGaa--GCCUag -5'
9167 5' -49.1 NC_002512.2 + 7902 0.66 0.999742
Target:  5'- uGAGGGAGACgaCCCGgacgaaccUCGGGUCu -3'
miRNA:   3'- cCUCUUUCUG--GGGCaaaga---AGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 42349 0.67 0.99969
Target:  5'- cGAGAcGGACcaggCCCGg--CUUCGGAa- -3'
miRNA:   3'- cCUCUuUCUG----GGGCaaaGAAGCCUag -5'
9167 5' -49.1 NC_002512.2 + 78350 0.67 0.999612
Target:  5'- cGGGAcGGGACCCC---UUUUCGGGUUu -3'
miRNA:   3'- cCUCU-UUCUGGGGcaaAGAAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 132002 0.67 0.999517
Target:  5'- gGGAGAGgggGGAUCUCGcgUCggcgggCGGGUCc -3'
miRNA:   3'- -CCUCUU---UCUGGGGCaaAGaa----GCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 226801 0.67 0.999403
Target:  5'- cGGAG-AAGAUCUCGUcggCggaCGGGUCg -3'
miRNA:   3'- -CCUCuUUCUGGGGCAaa-Gaa-GCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 104855 0.68 0.999103
Target:  5'- cGGGGAGGGACCUCGcg-CagCGGGc- -3'
miRNA:   3'- -CCUCUUUCUGGGGCaaaGaaGCCUag -5'
9167 5' -49.1 NC_002512.2 + 19293 0.68 0.998683
Target:  5'- cGGAG-AGGACCuCCGgacgaaCGGGUCg -3'
miRNA:   3'- -CCUCuUUCUGG-GGCaaagaaGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 173226 0.68 0.998416
Target:  5'- cGGAGAGAGugUCCaUggCUUC-GAUCa -3'
miRNA:   3'- -CCUCUUUCugGGGcAaaGAAGcCUAG- -5'
9167 5' -49.1 NC_002512.2 + 80831 0.68 0.998416
Target:  5'- cGGcGGAGGGGCCCCGUaggCgagccUCGGGa- -3'
miRNA:   3'- -CC-UCUUUCUGGGGCAaa-Ga----AGCCUag -5'
9167 5' -49.1 NC_002512.2 + 127854 0.69 0.99733
Target:  5'- cGGAGcgGGAUCCCGUgggCgcgCGGGa- -3'
miRNA:   3'- -CCUCuuUCUGGGGCAaa-Gaa-GCCUag -5'
9167 5' -49.1 NC_002512.2 + 33748 0.69 0.996852
Target:  5'- cGAGGAGcGGCCCUGgaagucCUUCaGGAUCg -3'
miRNA:   3'- cCUCUUU-CUGGGGCaaa---GAAG-CCUAG- -5'
9167 5' -49.1 NC_002512.2 + 150153 0.69 0.995684
Target:  5'- -aAGAAAGAaaCCCGUUUCUuuUUGGGUUa -3'
miRNA:   3'- ccUCUUUCUg-GGGCAAAGA--AGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 27668 0.71 0.988563
Target:  5'- uGGAGAcgaACCCCGUaUCccgCGGGUCc -3'
miRNA:   3'- -CCUCUuucUGGGGCAaAGaa-GCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 22364 0.71 0.98357
Target:  5'- gGGAGGAcgcGGCCCCGUccucgUCgucggucgCGGAUCc -3'
miRNA:   3'- -CCUCUUu--CUGGGGCAa----AGaa------GCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 3703 0.73 0.962361
Target:  5'- cGGAGGucGACCCgGUcgCUcccCGGGUCg -3'
miRNA:   3'- -CCUCUuuCUGGGgCAaaGAa--GCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 151812 0.73 0.954954
Target:  5'- gGGAGAGAGAagcgCCCGacgUUCcUCGGAUg -3'
miRNA:   3'- -CCUCUUUCUg---GGGCa--AAGaAGCCUAg -5'
9167 5' -49.1 NC_002512.2 + 102128 0.74 0.937321
Target:  5'- cGGAGggGGACCCUGgccgUCUaCGGccgCg -3'
miRNA:   3'- -CCUCuuUCUGGGGCaa--AGAaGCCua-G- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.