miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9168 5' -59 NC_002512.2 + 34962 0.66 0.861769
Target:  5'- -gCGGCCgcgacCGGGUCCggcugggccucGCGUCCCGcgGa -3'
miRNA:   3'- caGUCGG-----GCCCAGG-----------UGCAGGGCuaUg -5'
9168 5' -59 NC_002512.2 + 11663 0.67 0.84691
Target:  5'- aUCGGCgCCGcGGcccgCCGCGgCCCGAgGCg -3'
miRNA:   3'- cAGUCG-GGC-CCa---GGUGCaGGGCUaUG- -5'
9168 5' -59 NC_002512.2 + 105612 0.67 0.806782
Target:  5'- -gCAcGCCCGGGUCCgACGcCgCCGucggGUGCa -3'
miRNA:   3'- caGU-CGGGCCCAGG-UGCaG-GGC----UAUG- -5'
9168 5' -59 NC_002512.2 + 3887 0.67 0.806782
Target:  5'- aGUCAGCaCCGGcGUCC-CGgUCCCcuUGCc -3'
miRNA:   3'- -CAGUCG-GGCC-CAGGuGC-AGGGcuAUG- -5'
9168 5' -59 NC_002512.2 + 82023 0.67 0.815122
Target:  5'- cGUC-GCCCGGGUCgGgGUCgCGccgGCg -3'
miRNA:   3'- -CAGuCGGGCCCAGgUgCAGgGCua-UG- -5'
9168 5' -59 NC_002512.2 + 85583 0.67 0.814295
Target:  5'- -gCGGCCgGGagagcgcGUCCGCGUUCgGGUGCc -3'
miRNA:   3'- caGUCGGgCC-------CAGGUGCAGGgCUAUG- -5'
9168 5' -59 NC_002512.2 + 91685 0.67 0.806782
Target:  5'- cGUCGGCCCcgacGGUaggAUGUCCgCGAUGCa -3'
miRNA:   3'- -CAGUCGGGc---CCAgg-UGCAGG-GCUAUG- -5'
9168 5' -59 NC_002512.2 + 226399 0.67 0.806782
Target:  5'- -aCGGCgCCGGGacccgucgcgUCCGCGUCuCCGG-ACg -3'
miRNA:   3'- caGUCG-GGCCC----------AGGUGCAG-GGCUaUG- -5'
9168 5' -59 NC_002512.2 + 219403 0.67 0.806782
Target:  5'- gGUCGGCCCGccgcgacGcCCACG-CCCGggGCg -3'
miRNA:   3'- -CAGUCGGGCc------CaGGUGCaGGGCuaUG- -5'
9168 5' -59 NC_002512.2 + 191937 0.67 0.806782
Target:  5'- uGUCAcuGCCCGGGauagggucUCCGaccgUGUgCCGGUACg -3'
miRNA:   3'- -CAGU--CGGGCCC--------AGGU----GCAgGGCUAUG- -5'
9168 5' -59 NC_002512.2 + 138156 0.67 0.839213
Target:  5'- aUCGacGCCuUGGcGUCCACGUUCCGGUcccGCu -3'
miRNA:   3'- cAGU--CGG-GCC-CAGGUGCAGGGCUA---UG- -5'
9168 5' -59 NC_002512.2 + 38955 0.67 0.84691
Target:  5'- ---cGCCCGGGU-CugGUUCCGcUGCc -3'
miRNA:   3'- caguCGGGCCCAgGugCAGGGCuAUG- -5'
9168 5' -59 NC_002512.2 + 212777 0.67 0.839213
Target:  5'- cUCGGCCCuGGuGUCCGCGUCUUu---- -3'
miRNA:   3'- cAGUCGGG-CC-CAGGUGCAGGGcuaug -5'
9168 5' -59 NC_002512.2 + 143643 0.67 0.839213
Target:  5'- cUCGGCCCucucccccGGGUCCuccuCGUCCCc---- -3'
miRNA:   3'- cAGUCGGG--------CCCAGGu---GCAGGGcuaug -5'
9168 5' -59 NC_002512.2 + 223544 0.67 0.839213
Target:  5'- -gCGGCCCGcGGccCCGCG-CCCGGUc- -3'
miRNA:   3'- caGUCGGGC-CCa-GGUGCaGGGCUAug -5'
9168 5' -59 NC_002512.2 + 191651 0.67 0.831345
Target:  5'- --gAGCCaGGacggcggagacGUCCGCGUCCCGggGCu -3'
miRNA:   3'- cagUCGGgCC-----------CAGGUGCAGGGCuaUG- -5'
9168 5' -59 NC_002512.2 + 116356 0.67 0.831345
Target:  5'- -gCGGCCCGcGG-CCugGUgaCCCGcUGCg -3'
miRNA:   3'- caGUCGGGC-CCaGGugCA--GGGCuAUG- -5'
9168 5' -59 NC_002512.2 + 122624 0.67 0.823312
Target:  5'- cUCGGUCCGGGUgaacgcggaCCGCcaCUCGGUGCu -3'
miRNA:   3'- cAGUCGGGCCCA---------GGUGcaGGGCUAUG- -5'
9168 5' -59 NC_002512.2 + 121439 0.67 0.823312
Target:  5'- aGUCGGCCCcggagcccugagGGGUCCGCcccgcgCCCGccGCc -3'
miRNA:   3'- -CAGUCGGG------------CCCAGGUGca----GGGCuaUG- -5'
9168 5' -59 NC_002512.2 + 102255 0.67 0.823312
Target:  5'- --gGGCCCGGGUCCGggcguCGUCCaucucgGCu -3'
miRNA:   3'- cagUCGGGCCCAGGU-----GCAGGgcua--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.