miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9168 5' -59 NC_002512.2 + 170714 0.66 0.861769
Target:  5'- --aGGCCgGGGUCacgaggCACGgguuccaggCCCGGUACa -3'
miRNA:   3'- cagUCGGgCCCAG------GUGCa--------GGGCUAUG- -5'
9168 5' -59 NC_002512.2 + 180225 0.66 0.88063
Target:  5'- -cCGGCCCgcgccccguacgugGGGUCCGacugGUCCCGGc-- -3'
miRNA:   3'- caGUCGGG--------------CCCAGGUg---CAGGGCUaug -5'
9168 5' -59 NC_002512.2 + 215130 0.66 0.882637
Target:  5'- -aCGGCCgGGGUCCGCGcgaCGGgggagGCg -3'
miRNA:   3'- caGUCGGgCCCAGGUGCaggGCUa----UG- -5'
9168 5' -59 NC_002512.2 + 82201 0.66 0.861769
Target:  5'- cGUCGGgCCGGcGUCC---UCCCGggGCg -3'
miRNA:   3'- -CAGUCgGGCC-CAGGugcAGGGCuaUG- -5'
9168 5' -59 NC_002512.2 + 34962 0.66 0.861769
Target:  5'- -gCGGCCgcgacCGGGUCCggcugggccucGCGUCCCGcgGa -3'
miRNA:   3'- caGUCGG-----GCCCAGG-----------UGCAGGGCuaUg -5'
9168 5' -59 NC_002512.2 + 7451 0.66 0.875877
Target:  5'- -gCGGCCCGGGggaagCCGCGgCgCGGcUGCc -3'
miRNA:   3'- caGUCGGGCCCa----GGUGCaGgGCU-AUG- -5'
9168 5' -59 NC_002512.2 + 7103 0.66 0.889196
Target:  5'- -gCGGUCCuGGUCCGCGUagCCG-UGCu -3'
miRNA:   3'- caGUCGGGcCCAGGUGCAg-GGCuAUG- -5'
9168 5' -59 NC_002512.2 + 110738 0.66 0.874501
Target:  5'- -aCAGCuCCGGcagcaggaucgUCGCGUCCCGGUAg -3'
miRNA:   3'- caGUCG-GGCCca---------GGUGCAGGGCUAUg -5'
9168 5' -59 NC_002512.2 + 4115 0.66 0.874501
Target:  5'- -gCAGCCuCGGGaacagauggaucCCAUGUCCCGGccGCg -3'
miRNA:   3'- caGUCGG-GCCCa-----------GGUGCAGGGCUa-UG- -5'
9168 5' -59 NC_002512.2 + 108609 0.66 0.868919
Target:  5'- -gCGGCCgCGGG-CC-CGUCCCGucucucguUACu -3'
miRNA:   3'- caGUCGG-GCCCaGGuGCAGGGCu-------AUG- -5'
9168 5' -59 NC_002512.2 + 153491 0.66 0.889196
Target:  5'- -cCAGUCCGGGgaCgGCGUUCCGGg-- -3'
miRNA:   3'- caGUCGGGCCCa-GgUGCAGGGCUaug -5'
9168 5' -59 NC_002512.2 + 139256 0.66 0.875877
Target:  5'- -gCGGCgCCGGGUCgCGcCG-CCCGGcGCg -3'
miRNA:   3'- caGUCG-GGCCCAG-GU-GCaGGGCUaUG- -5'
9168 5' -59 NC_002512.2 + 81619 0.66 0.875877
Target:  5'- cGUCGGCCaGGGccgucgCCACGUCCag--GCu -3'
miRNA:   3'- -CAGUCGGgCCCa-----GGUGCAGGgcuaUG- -5'
9168 5' -59 NC_002512.2 + 122898 0.66 0.889196
Target:  5'- -cCGGCCCGGG----CGUCCCGGccuucUACg -3'
miRNA:   3'- caGUCGGGCCCagguGCAGGGCU-----AUG- -5'
9168 5' -59 NC_002512.2 + 145402 0.66 0.868919
Target:  5'- cGUCcggGGUCCGGGUCUucuucggcuCGUCCgccgCGGUGCu -3'
miRNA:   3'- -CAG---UCGGGCCCAGGu--------GCAGG----GCUAUG- -5'
9168 5' -59 NC_002512.2 + 5280 0.66 0.882637
Target:  5'- --gAGCCCGGucggcaCCGCGUCCCGc--- -3'
miRNA:   3'- cagUCGGGCCca----GGUGCAGGGCuaug -5'
9168 5' -59 NC_002512.2 + 189523 0.66 0.854431
Target:  5'- --gGGCCCGGGcucgCCGCGgucggcgUCCGcgGCa -3'
miRNA:   3'- cagUCGGGCCCa---GGUGCa------GGGCuaUG- -5'
9168 5' -59 NC_002512.2 + 44395 0.66 0.889196
Target:  5'- -gCAGCCCGGcGUgcgCCAUGaCCUGcgGCg -3'
miRNA:   3'- caGUCGGGCC-CA---GGUGCaGGGCuaUG- -5'
9168 5' -59 NC_002512.2 + 214427 0.66 0.889196
Target:  5'- ---cGCCCGaGGaCCGCGUCCCcgucUACg -3'
miRNA:   3'- caguCGGGC-CCaGGUGCAGGGcu--AUG- -5'
9168 5' -59 NC_002512.2 + 184764 0.66 0.861769
Target:  5'- -gCGGCCCGuGGUCguCGacCCCGAggACg -3'
miRNA:   3'- caGUCGGGC-CCAGguGCa-GGGCUa-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.