miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9168 5' -59 NC_002512.2 + 54181 1.09 0.00243
Target:  5'- gGUCAGCCCGGGUCCACGUCCCGAUACg -3'
miRNA:   3'- -CAGUCGGGCCCAGGUGCAGGGCUAUG- -5'
9168 5' -59 NC_002512.2 + 54375 1.09 0.00243
Target:  5'- gGUCAGCCCGGGUCCACGUCCCGAUACg -3'
miRNA:   3'- -CAGUCGGGCCCAGGUGCAGGGCUAUG- -5'
9168 5' -59 NC_002512.2 + 174257 0.79 0.22696
Target:  5'- cUC-GCCCGGGUCCGgGUCCCGGg-- -3'
miRNA:   3'- cAGuCGGGCCCAGGUgCAGGGCUaug -5'
9168 5' -59 NC_002512.2 + 204800 0.79 0.248885
Target:  5'- ---cGCCCGGGaggUCCGCGUCCCGGggGCg -3'
miRNA:   3'- caguCGGGCCC---AGGUGCAGGGCUa-UG- -5'
9168 5' -59 NC_002512.2 + 87791 0.77 0.318188
Target:  5'- gGUCGGUaCCGGGUCCGCGUUCgGuUGCa -3'
miRNA:   3'- -CAGUCG-GGCCCAGGUGCAGGgCuAUG- -5'
9168 5' -59 NC_002512.2 + 80655 0.76 0.369363
Target:  5'- -gCGGCgCCGGGUCCGuCgGUCCCGcgGCg -3'
miRNA:   3'- caGUCG-GGCCCAGGU-G-CAGGGCuaUG- -5'
9168 5' -59 NC_002512.2 + 45105 0.75 0.401035
Target:  5'- --aGGCCCGGG-CCACGUCCuCGGggucgACg -3'
miRNA:   3'- cagUCGGGCCCaGGUGCAGG-GCUa----UG- -5'
9168 5' -59 NC_002512.2 + 204465 0.75 0.401035
Target:  5'- cGUUcGCCCGGGUCUACG-CCCGuaACg -3'
miRNA:   3'- -CAGuCGGGCCCAGGUGCaGGGCuaUG- -5'
9168 5' -59 NC_002512.2 + 44830 0.75 0.417506
Target:  5'- gGUCgaGGCCCGGGUCgGCGUCCagGAUc- -3'
miRNA:   3'- -CAG--UCGGGCCCAGgUGCAGGg-CUAug -5'
9168 5' -59 NC_002512.2 + 124024 0.74 0.434382
Target:  5'- -gCuGCCCcuGGG-CCACGUCCCGAUGa -3'
miRNA:   3'- caGuCGGG--CCCaGGUGCAGGGCUAUg -5'
9168 5' -59 NC_002512.2 + 130930 0.74 0.451648
Target:  5'- gGUCGGCCCGGuUCCcCG-CCCGAcUGCa -3'
miRNA:   3'- -CAGUCGGGCCcAGGuGCaGGGCU-AUG- -5'
9168 5' -59 NC_002512.2 + 128227 0.73 0.478231
Target:  5'- aUCGGCCCGGcGUCCGCGg-CCGccGCg -3'
miRNA:   3'- cAGUCGGGCC-CAGGUGCagGGCuaUG- -5'
9168 5' -59 NC_002512.2 + 134597 0.73 0.505561
Target:  5'- cGUCuuccuGCCCGGGUUCcccuGCGUCCUGGUcuACu -3'
miRNA:   3'- -CAGu----CGGGCCCAGG----UGCAGGGCUA--UG- -5'
9168 5' -59 NC_002512.2 + 104872 0.72 0.533541
Target:  5'- cUCGGCCCcgcGGGcgucCCugGcCCCGAUGCa -3'
miRNA:   3'- cAGUCGGG---CCCa---GGugCaGGGCUAUG- -5'
9168 5' -59 NC_002512.2 + 143785 0.72 0.546787
Target:  5'- ---cGCCCGGGUCCAUGagccgccggcuguucUCCCGGUcCa -3'
miRNA:   3'- caguCGGGCCCAGGUGC---------------AGGGCUAuG- -5'
9168 5' -59 NC_002512.2 + 133939 0.72 0.57165
Target:  5'- -gCGGCCCGacGGcCCGCGUCCUGAa-- -3'
miRNA:   3'- caGUCGGGC--CCaGGUGCAGGGCUaug -5'
9168 5' -59 NC_002512.2 + 110463 0.72 0.57165
Target:  5'- -cCAGgucCCCGcGGUCCACGcUCCCGAgcaGCg -3'
miRNA:   3'- caGUC---GGGC-CCAGGUGC-AGGGCUa--UG- -5'
9168 5' -59 NC_002512.2 + 54569 0.71 0.600657
Target:  5'- gGUCAGCCCGGaUCCGCacCCUGAcACa -3'
miRNA:   3'- -CAGUCGGGCCcAGGUGcaGGGCUaUG- -5'
9168 5' -59 NC_002512.2 + 127005 0.71 0.638621
Target:  5'- gGUCGuaCCCGGGUCCcccguagGCGUCCCcccggucggGAUACg -3'
miRNA:   3'- -CAGUc-GGGCCCAGG-------UGCAGGG---------CUAUG- -5'
9168 5' -59 NC_002512.2 + 209018 0.71 0.639595
Target:  5'- cGUCGccGCCaugagCGGGgcggCCGCGUCCCGGaGCg -3'
miRNA:   3'- -CAGU--CGG-----GCCCa---GGUGCAGGGCUaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.