miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9168 5' -59 NC_002512.2 + 45105 0.75 0.401035
Target:  5'- --aGGCCCGGG-CCACGUCCuCGGggucgACg -3'
miRNA:   3'- cagUCGGGCCCaGGUGCAGG-GCUa----UG- -5'
9168 5' -59 NC_002512.2 + 105612 0.67 0.806782
Target:  5'- -gCAcGCCCGGGUCCgACGcCgCCGucggGUGCa -3'
miRNA:   3'- caGU-CGGGCCCAGG-UGCaG-GGC----UAUG- -5'
9168 5' -59 NC_002512.2 + 88166 0.68 0.798298
Target:  5'- cGUC-GCCCGGGacggUCGCGUCCgGGa-- -3'
miRNA:   3'- -CAGuCGGGCCCa---GGUGCAGGgCUaug -5'
9168 5' -59 NC_002512.2 + 3544 0.68 0.788809
Target:  5'- --aAGCCCGGGuagaagaUCCGucugcCGUCCCGAgccACg -3'
miRNA:   3'- cagUCGGGCCC-------AGGU-----GCAGGGCUa--UG- -5'
9168 5' -59 NC_002512.2 + 28526 0.68 0.77206
Target:  5'- gGUgAGCUguCGGGUCCGCcgccgCCCGAUGu -3'
miRNA:   3'- -CAgUCGG--GCCCAGGUGca---GGGCUAUg -5'
9168 5' -59 NC_002512.2 + 19655 0.68 0.77206
Target:  5'- cGUUAGUaagacagggaUCGGGUCCGCGUCuCCGucucggACg -3'
miRNA:   3'- -CAGUCG----------GGCCCAGGUGCAG-GGCua----UG- -5'
9168 5' -59 NC_002512.2 + 69236 0.68 0.762172
Target:  5'- cGUC-GCCgCGGucgauccagggucGUCCGCGUCCCGGa-- -3'
miRNA:   3'- -CAGuCGG-GCC-------------CAGGUGCAGGGCUaug -5'
9168 5' -59 NC_002512.2 + 130131 0.68 0.761267
Target:  5'- --aGGCCCGGGguggugucgcggCCGCGgggCCCGGcgGCg -3'
miRNA:   3'- cagUCGGGCCCa-----------GGUGCa--GGGCUa-UG- -5'
9168 5' -59 NC_002512.2 + 18143 0.68 0.753989
Target:  5'- ---cGCCCGGG-CCGCGUCgCGGg-- -3'
miRNA:   3'- caguCGGGCCCaGGUGCAGgGCUaug -5'
9168 5' -59 NC_002512.2 + 154119 0.69 0.707246
Target:  5'- cGUCcuCCCGGGcUCCGCGgUCuCCGAcGCg -3'
miRNA:   3'- -CAGucGGGCCC-AGGUGC-AG-GGCUaUG- -5'
9168 5' -59 NC_002512.2 + 11225 0.69 0.706293
Target:  5'- gGUguGCCCGGGuauccgccuccgUCCGCcgggcgcgacaggGUCCCGAcGCg -3'
miRNA:   3'- -CAguCGGGCCC------------AGGUG-------------CAGGGCUaUG- -5'
9168 5' -59 NC_002512.2 + 107247 0.7 0.68809
Target:  5'- cGUCAGCaCCGaguggcGGUCCGCGUucaCCCGGa-- -3'
miRNA:   3'- -CAGUCG-GGC------CCAGGUGCA---GGGCUaug -5'
9168 5' -59 NC_002512.2 + 82711 0.7 0.668766
Target:  5'- -gCGGCgCGGGcCCGCGUUCCGGc-- -3'
miRNA:   3'- caGUCGgGCCCaGGUGCAGGGCUaug -5'
9168 5' -59 NC_002512.2 + 5761 0.7 0.659059
Target:  5'- -cCGGCgCGGGUCCACGg-CCGAg-- -3'
miRNA:   3'- caGUCGgGCCCAGGUGCagGGCUaug -5'
9168 5' -59 NC_002512.2 + 121623 0.71 0.639595
Target:  5'- -gCAGCCCGGcGaaucgcggcUCCGCGUCCUGGa-- -3'
miRNA:   3'- caGUCGGGCC-C---------AGGUGCAGGGCUaug -5'
9168 5' -59 NC_002512.2 + 133939 0.72 0.57165
Target:  5'- -gCGGCCCGacGGcCCGCGUCCUGAa-- -3'
miRNA:   3'- caGUCGGGC--CCaGGUGCAGGGCUaug -5'
9168 5' -59 NC_002512.2 + 134597 0.73 0.505561
Target:  5'- cGUCuuccuGCCCGGGUUCcccuGCGUCCUGGUcuACu -3'
miRNA:   3'- -CAGu----CGGGCCCAGG----UGCAGGGCUA--UG- -5'
9168 5' -59 NC_002512.2 + 130930 0.74 0.451648
Target:  5'- gGUCGGCCCGGuUCCcCG-CCCGAcUGCa -3'
miRNA:   3'- -CAGUCGGGCCcAGGuGCaGGGCU-AUG- -5'
9168 5' -59 NC_002512.2 + 44830 0.75 0.417506
Target:  5'- gGUCgaGGCCCGGGUCgGCGUCCagGAUc- -3'
miRNA:   3'- -CAG--UCGGGCCCAGgUGCAGGg-CUAug -5'
9168 5' -59 NC_002512.2 + 80655 0.76 0.369363
Target:  5'- -gCGGCgCCGGGUCCGuCgGUCCCGcgGCg -3'
miRNA:   3'- caGUCG-GGCCCAGGU-G-CAGGGCuaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.