miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9168 5' -59 NC_002512.2 + 3544 0.68 0.788809
Target:  5'- --aAGCCCGGGuagaagaUCCGucugcCGUCCCGAgccACg -3'
miRNA:   3'- cagUCGGGCCC-------AGGU-----GCAGGGCUa--UG- -5'
9168 5' -59 NC_002512.2 + 3887 0.67 0.806782
Target:  5'- aGUCAGCaCCGGcGUCC-CGgUCCCcuUGCc -3'
miRNA:   3'- -CAGUCG-GGCC-CAGGuGC-AGGGcuAUG- -5'
9168 5' -59 NC_002512.2 + 4115 0.66 0.874501
Target:  5'- -gCAGCCuCGGGaacagauggaucCCAUGUCCCGGccGCg -3'
miRNA:   3'- caGUCGG-GCCCa-----------GGUGCAGGGCUa-UG- -5'
9168 5' -59 NC_002512.2 + 5280 0.66 0.882637
Target:  5'- --gAGCCCGGucggcaCCGCGUCCCGc--- -3'
miRNA:   3'- cagUCGGGCCca----GGUGCAGGGCuaug -5'
9168 5' -59 NC_002512.2 + 5761 0.7 0.659059
Target:  5'- -cCGGCgCGGGUCCACGg-CCGAg-- -3'
miRNA:   3'- caGUCGgGCCCAGGUGCagGGCUaug -5'
9168 5' -59 NC_002512.2 + 7103 0.66 0.889196
Target:  5'- -gCGGUCCuGGUCCGCGUagCCG-UGCu -3'
miRNA:   3'- caGUCGGGcCCAGGUGCAg-GGCuAUG- -5'
9168 5' -59 NC_002512.2 + 7451 0.66 0.875877
Target:  5'- -gCGGCCCGGGggaagCCGCGgCgCGGcUGCc -3'
miRNA:   3'- caGUCGGGCCCa----GGUGCaGgGCU-AUG- -5'
9168 5' -59 NC_002512.2 + 9691 0.67 0.839213
Target:  5'- cGUCgGGCCCcggcggGGGUUCGCGgaaccuccUCCCGAcGCa -3'
miRNA:   3'- -CAG-UCGGG------CCCAGGUGC--------AGGGCUaUG- -5'
9168 5' -59 NC_002512.2 + 11225 0.69 0.706293
Target:  5'- gGUguGCCCGGGuauccgccuccgUCCGCcgggcgcgacaggGUCCCGAcGCg -3'
miRNA:   3'- -CAguCGGGCCC------------AGGUG-------------CAGGGCUaUG- -5'
9168 5' -59 NC_002512.2 + 11663 0.67 0.84691
Target:  5'- aUCGGCgCCGcGGcccgCCGCGgCCCGAgGCg -3'
miRNA:   3'- cAGUCG-GGC-CCa---GGUGCaGGGCUaUG- -5'
9168 5' -59 NC_002512.2 + 15644 0.67 0.838433
Target:  5'- cUCGGCCgCGGGcggcgagCCgacgagccgccugACGUCCCGggGCa -3'
miRNA:   3'- cAGUCGG-GCCCa------GG-------------UGCAGGGCuaUG- -5'
9168 5' -59 NC_002512.2 + 18143 0.68 0.753989
Target:  5'- ---cGCCCGGG-CCGCGUCgCGGg-- -3'
miRNA:   3'- caguCGGGCCCaGGUGCAGgGCUaug -5'
9168 5' -59 NC_002512.2 + 19655 0.68 0.77206
Target:  5'- cGUUAGUaagacagggaUCGGGUCCGCGUCuCCGucucggACg -3'
miRNA:   3'- -CAGUCG----------GGCCCAGGUGCAG-GGCua----UG- -5'
9168 5' -59 NC_002512.2 + 28526 0.68 0.77206
Target:  5'- gGUgAGCUguCGGGUCCGCcgccgCCCGAUGu -3'
miRNA:   3'- -CAgUCGG--GCCCAGGUGca---GGGCUAUg -5'
9168 5' -59 NC_002512.2 + 34962 0.66 0.861769
Target:  5'- -gCGGCCgcgacCGGGUCCggcugggccucGCGUCCCGcgGa -3'
miRNA:   3'- caGUCGG-----GCCCAGG-----------UGCAGGGCuaUg -5'
9168 5' -59 NC_002512.2 + 38918 0.67 0.831345
Target:  5'- -aCGGCCCGGaGgggccgCCGCGgcgggcgCCCGcGUGCg -3'
miRNA:   3'- caGUCGGGCC-Ca-----GGUGCa------GGGC-UAUG- -5'
9168 5' -59 NC_002512.2 + 38955 0.67 0.84691
Target:  5'- ---cGCCCGGGU-CugGUUCCGcUGCc -3'
miRNA:   3'- caguCGGGCCCAgGugCAGGGCuAUG- -5'
9168 5' -59 NC_002512.2 + 44395 0.66 0.889196
Target:  5'- -gCAGCCCGGcGUgcgCCAUGaCCUGcgGCg -3'
miRNA:   3'- caGUCGGGCC-CA---GGUGCaGGGCuaUG- -5'
9168 5' -59 NC_002512.2 + 44830 0.75 0.417506
Target:  5'- gGUCgaGGCCCGGGUCgGCGUCCagGAUc- -3'
miRNA:   3'- -CAG--UCGGGCCCAGgUGCAGGg-CUAug -5'
9168 5' -59 NC_002512.2 + 45105 0.75 0.401035
Target:  5'- --aGGCCCGGG-CCACGUCCuCGGggucgACg -3'
miRNA:   3'- cagUCGGGCCCaGGUGCAGG-GCUa----UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.