miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9168 5' -59 NC_002512.2 + 209018 0.71 0.639595
Target:  5'- cGUCGccGCCaugagCGGGgcggCCGCGUCCCGGaGCg -3'
miRNA:   3'- -CAGU--CGG-----GCCCa---GGUGCAGGGCUaUG- -5'
9168 5' -59 NC_002512.2 + 153344 0.7 0.649333
Target:  5'- -cCGGUCCGGGUCgGCGggUCCCGcuggGCu -3'
miRNA:   3'- caGUCGGGCCCAGgUGC--AGGGCua--UG- -5'
9168 5' -59 NC_002512.2 + 5761 0.7 0.659059
Target:  5'- -cCGGCgCGGGUCCACGg-CCGAg-- -3'
miRNA:   3'- caGUCGgGCCCAGGUGCagGGCUaug -5'
9168 5' -59 NC_002512.2 + 181639 0.7 0.668766
Target:  5'- uGUCGuCCCacuuguuGG-CCGCGUCCCGGUACa -3'
miRNA:   3'- -CAGUcGGGc------CCaGGUGCAGGGCUAUG- -5'
9168 5' -59 NC_002512.2 + 124785 0.7 0.668766
Target:  5'- -gCAGuCCCGGGUCCGgGUCCagcugACg -3'
miRNA:   3'- caGUC-GGGCCCAGGUgCAGGgcua-UG- -5'
9168 5' -59 NC_002512.2 + 82711 0.7 0.668766
Target:  5'- -gCGGCgCGGGcCCGCGUUCCGGc-- -3'
miRNA:   3'- caGUCGgGCCCaGGUGCAGGGCUaug -5'
9168 5' -59 NC_002512.2 + 107247 0.7 0.68809
Target:  5'- cGUCAGCaCCGaguggcGGUCCGCGUucaCCCGGa-- -3'
miRNA:   3'- -CAGUCG-GGC------CCAGGUGCA---GGGCUaug -5'
9168 5' -59 NC_002512.2 + 153299 0.7 0.68809
Target:  5'- gGUCGGUCCGGGUCgGCcgguUCCCGcUGg -3'
miRNA:   3'- -CAGUCGGGCCCAGgUGc---AGGGCuAUg -5'
9168 5' -59 NC_002512.2 + 11225 0.69 0.706293
Target:  5'- gGUguGCCCGGGuauccgccuccgUCCGCcgggcgcgacaggGUCCCGAcGCg -3'
miRNA:   3'- -CAguCGGGCCC------------AGGUG-------------CAGGGCUaUG- -5'
9168 5' -59 NC_002512.2 + 154119 0.69 0.707246
Target:  5'- cGUCcuCCCGGGcUCCGCGgUCuCCGAcGCg -3'
miRNA:   3'- -CAGucGGGCCC-AGGUGC-AG-GGCUaUG- -5'
9168 5' -59 NC_002512.2 + 89893 0.69 0.707246
Target:  5'- cUCGGUCUGGGUCgGCGaCCCcacgcagacGAUGCa -3'
miRNA:   3'- cAGUCGGGCCCAGgUGCaGGG---------CUAUG- -5'
9168 5' -59 NC_002512.2 + 109050 0.69 0.708198
Target:  5'- --gGGCUCGGGggacgaccggacccgCCGCGUCCCGGg-- -3'
miRNA:   3'- cagUCGGGCCCa--------------GGUGCAGGGCUaug -5'
9168 5' -59 NC_002512.2 + 149646 0.69 0.735528
Target:  5'- --gAGCCCGGccCgCACGUCCCGGaGCu -3'
miRNA:   3'- cagUCGGGCCcaG-GUGCAGGGCUaUG- -5'
9168 5' -59 NC_002512.2 + 108109 0.69 0.744803
Target:  5'- cGUCcccGCCuCGGcgGUCCGCgGUCCCGAgagGCg -3'
miRNA:   3'- -CAGu--CGG-GCC--CAGGUG-CAGGGCUa--UG- -5'
9168 5' -59 NC_002512.2 + 194763 0.68 0.753989
Target:  5'- aGUCGGgaCCuGGUCCGCGUCCaCGGg-- -3'
miRNA:   3'- -CAGUCg-GGcCCAGGUGCAGG-GCUaug -5'
9168 5' -59 NC_002512.2 + 18143 0.68 0.753989
Target:  5'- ---cGCCCGGG-CCGCGUCgCGGg-- -3'
miRNA:   3'- caguCGGGCCCaGGUGCAGgGCUaug -5'
9168 5' -59 NC_002512.2 + 103330 0.68 0.753989
Target:  5'- --aGGCCCGGG-CgGCGUagCCCGggGCg -3'
miRNA:   3'- cagUCGGGCCCaGgUGCA--GGGCuaUG- -5'
9168 5' -59 NC_002512.2 + 130131 0.68 0.761267
Target:  5'- --aGGCCCGGGguggugucgcggCCGCGgggCCCGGcgGCg -3'
miRNA:   3'- cagUCGGGCCCa-----------GGUGCa--GGGCUa-UG- -5'
9168 5' -59 NC_002512.2 + 69236 0.68 0.762172
Target:  5'- cGUC-GCCgCGGucgauccagggucGUCCGCGUCCCGGa-- -3'
miRNA:   3'- -CAGuCGG-GCC-------------CAGGUGCAGGGCUaug -5'
9168 5' -59 NC_002512.2 + 211783 0.68 0.771166
Target:  5'- --aGGCCCGGGUggCCGCGggggccgUCCCGccGCg -3'
miRNA:   3'- cagUCGGGCCCA--GGUGC-------AGGGCuaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.