miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9170 5' -57.7 NC_002512.2 + 204917 0.66 0.925234
Target:  5'- cGGGUGACGGGGaCGgguucgacucCCUCCuggacguUCCUCg- -3'
miRNA:   3'- -CCCACUGUCUCgGU----------GGAGG-------AGGAGac -5'
9170 5' -57.7 NC_002512.2 + 193744 0.66 0.92047
Target:  5'- uGGGcGaacgcggccucGCGGucGUCGCCUCCgUCCUCUGu -3'
miRNA:   3'- -CCCaC-----------UGUCu-CGGUGGAGG-AGGAGAC- -5'
9170 5' -57.7 NC_002512.2 + 111811 0.66 0.903301
Target:  5'- cGGcGcCGGAGCCGCCcCCUCCg--- -3'
miRNA:   3'- cCCaCuGUCUCGGUGGaGGAGGagac -5'
9170 5' -57.7 NC_002512.2 + 222493 0.66 0.903301
Target:  5'- -cGUGGCGGuGGCCGCCUUCUgCgcCUGg -3'
miRNA:   3'- ccCACUGUC-UCGGUGGAGGAgGa-GAC- -5'
9170 5' -57.7 NC_002512.2 + 225299 0.66 0.897143
Target:  5'- cGGcccGCGGcGCCGCCUCCUCCg--- -3'
miRNA:   3'- cCCac-UGUCuCGGUGGAGGAGGagac -5'
9170 5' -57.7 NC_002512.2 + 294 0.67 0.89077
Target:  5'- gGGGgccagGGCAGcccacGCCcuCCggCCUCCUCUGc -3'
miRNA:   3'- -CCCa----CUGUCu----CGGu-GGa-GGAGGAGAC- -5'
9170 5' -57.7 NC_002512.2 + 229697 0.67 0.89077
Target:  5'- gGGGgccagGGCAGcccacGCCcuCCggCCUCCUCUGc -3'
miRNA:   3'- -CCCa----CUGUCu----CGGu-GGa-GGAGGAGAC- -5'
9170 5' -57.7 NC_002512.2 + 192914 0.67 0.89077
Target:  5'- cGGUc-CAGAGCCGCCUCCgaugCCa--- -3'
miRNA:   3'- cCCAcuGUCUCGGUGGAGGa---GGagac -5'
9170 5' -57.7 NC_002512.2 + 105302 0.67 0.880138
Target:  5'- aGG-GACAGGGCgucgcucuugacgucCcggGCCUCCUCCUCg- -3'
miRNA:   3'- cCCaCUGUCUCG---------------G---UGGAGGAGGAGac -5'
9170 5' -57.7 NC_002512.2 + 219429 0.67 0.877397
Target:  5'- cGG-GGCGGcGGCgGCCUCCUCCg--- -3'
miRNA:   3'- cCCaCUGUC-UCGgUGGAGGAGGagac -5'
9170 5' -57.7 NC_002512.2 + 171045 0.67 0.855829
Target:  5'- cGGGUGugAGcacGCCGCCgUCCUUCa--- -3'
miRNA:   3'- -CCCACugUCu--CGGUGG-AGGAGGagac -5'
9170 5' -57.7 NC_002512.2 + 3275 0.68 0.84749
Target:  5'- cGGUcGACgagaucaucgcccAGAGCCGCCcacgaugCCUCCUCg- -3'
miRNA:   3'- cCCA-CUG-------------UCUCGGUGGa------GGAGGAGac -5'
9170 5' -57.7 NC_002512.2 + 124375 0.68 0.840504
Target:  5'- gGGGUccaGcCAGAGCCcCCcgUCCUCC-CUGa -3'
miRNA:   3'- -CCCA---CuGUCUCGGuGG--AGGAGGaGAC- -5'
9170 5' -57.7 NC_002512.2 + 175617 0.68 0.824477
Target:  5'- gGGGUGcCAGGGUCGCCgacgCCgccgCC-CUGc -3'
miRNA:   3'- -CCCACuGUCUCGGUGGa---GGa---GGaGAC- -5'
9170 5' -57.7 NC_002512.2 + 96046 0.69 0.772742
Target:  5'- cGGUGuccucCGGAgagGCCucCCUCCUCCUCUu -3'
miRNA:   3'- cCCACu----GUCU---CGGu-GGAGGAGGAGAc -5'
9170 5' -57.7 NC_002512.2 + 219872 0.69 0.760922
Target:  5'- cGGGUGACGaGGCCggggucggagacgaGCCgaccgcCCUCCUCUc -3'
miRNA:   3'- -CCCACUGUcUCGG--------------UGGa-----GGAGGAGAc -5'
9170 5' -57.7 NC_002512.2 + 58891 0.7 0.754482
Target:  5'- aGGUGAaaccCGGAGCCcgagcCCUCCgUCCUCa- -3'
miRNA:   3'- cCCACU----GUCUCGGu----GGAGG-AGGAGac -5'
9170 5' -57.7 NC_002512.2 + 192325 0.71 0.687854
Target:  5'- cGGUGACGGGGCgGCUcCuCUCCUCc- -3'
miRNA:   3'- cCCACUGUCUCGgUGGaG-GAGGAGac -5'
9170 5' -57.7 NC_002512.2 + 216057 0.71 0.677122
Target:  5'- cGGGcGuuCGGGGCCGgguccucucuccuCCUCCUCCUCUc -3'
miRNA:   3'- -CCCaCu-GUCUCGGU-------------GGAGGAGGAGAc -5'
9170 5' -57.7 NC_002512.2 + 214635 0.71 0.657511
Target:  5'- cGGG-GACGcGGGCCGCCUCgcagucuCUCCUCc- -3'
miRNA:   3'- -CCCaCUGU-CUCGGUGGAG-------GAGGAGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.