Results 1 - 20 of 40 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9174 | 3' | -58.5 | NC_002512.2 | + | 191662 | 0.66 | 0.900496 |
Target: 5'- gCGGAGACguCCgcGUCCCGgGGCuG-GGCg -3' miRNA: 3'- aGCCUCUG--GGa-UAGGGC-CCGuCaCUG- -5' |
|||||||
9174 | 3' | -58.5 | NC_002512.2 | + | 180033 | 0.66 | 0.894279 |
Target: 5'- cUCGG-GAUCUccgAUCCCaGGCGGUG-Cg -3' miRNA: 3'- -AGCCuCUGGGa--UAGGGcCCGUCACuG- -5' |
|||||||
9174 | 3' | -58.5 | NC_002512.2 | + | 193577 | 0.66 | 0.885883 |
Target: 5'- gUGGGGAUCUcAUCCUccgcggggacgacaGGGgAGUGACg -3' miRNA: 3'- aGCCUCUGGGaUAGGG--------------CCCgUCACUG- -5' |
|||||||
9174 | 3' | -58.5 | NC_002512.2 | + | 128392 | 0.66 | 0.881218 |
Target: 5'- gCGGcGGACCCcGUCUCGaGCccGGUGGCg -3' miRNA: 3'- aGCC-UCUGGGaUAGGGCcCG--UCACUG- -5' |
|||||||
9174 | 3' | -58.5 | NC_002512.2 | + | 114157 | 0.66 | 0.881218 |
Target: 5'- -aGGAcGACCCgggCCCGGuccuccuCGGUGGCg -3' miRNA: 3'- agCCU-CUGGGauaGGGCCc------GUCACUG- -5' |
|||||||
9174 | 3' | -58.5 | NC_002512.2 | + | 165653 | 0.66 | 0.874381 |
Target: 5'- uUCGGGGGCCU--UCCCGaGGCcgAGguccucgaUGACa -3' miRNA: 3'- -AGCCUCUGGGauAGGGC-CCG--UC--------ACUG- -5' |
|||||||
9174 | 3' | -58.5 | NC_002512.2 | + | 218635 | 0.67 | 0.867347 |
Target: 5'- gUCGG-GACCCUGUCgCGcccGGCGGacggaGGCg -3' miRNA: 3'- -AGCCuCUGGGAUAGgGC---CCGUCa----CUG- -5' |
|||||||
9174 | 3' | -58.5 | NC_002512.2 | + | 153227 | 0.67 | 0.860118 |
Target: 5'- cCGGuucCCCcGUCCCGGGCucccUGGCa -3' miRNA: 3'- aGCCucuGGGaUAGGGCCCGuc--ACUG- -5' |
|||||||
9174 | 3' | -58.5 | NC_002512.2 | + | 109053 | 0.67 | 0.860118 |
Target: 5'- cUCGGgggacgaccGGACCCgccgcGUCCCGGGUccgAGaGACc -3' miRNA: 3'- -AGCC---------UCUGGGa----UAGGGCCCG---UCaCUG- -5' |
|||||||
9174 | 3' | -58.5 | NC_002512.2 | + | 159560 | 0.67 | 0.848164 |
Target: 5'- aCGGugauccaucucuaccGGACCCUGUaCCCGGcuuUGGUGGCg -3' miRNA: 3'- aGCC---------------UCUGGGAUA-GGGCCc--GUCACUG- -5' |
|||||||
9174 | 3' | -58.5 | NC_002512.2 | + | 92812 | 0.67 | 0.845102 |
Target: 5'- cCGG-GGCCUguUCCCGGGCGc-GGCg -3' miRNA: 3'- aGCCuCUGGGauAGGGCCCGUcaCUG- -5' |
|||||||
9174 | 3' | -58.5 | NC_002512.2 | + | 128428 | 0.67 | 0.837326 |
Target: 5'- cCGGAG-CCCUccUCgCGGGCGGccaUGGCc -3' miRNA: 3'- aGCCUCuGGGAu-AGgGCCCGUC---ACUG- -5' |
|||||||
9174 | 3' | -58.5 | NC_002512.2 | + | 173537 | 0.67 | 0.829378 |
Target: 5'- gUCGG-GGCCgUcugCCCGGGCuGUGcCg -3' miRNA: 3'- -AGCCuCUGGgAua-GGGCCCGuCACuG- -5' |
|||||||
9174 | 3' | -58.5 | NC_002512.2 | + | 99640 | 0.67 | 0.826153 |
Target: 5'- cUCGGAgGGCCCggcgcccgagccgAUCCCcGGCAGcucgGGCg -3' miRNA: 3'- -AGCCU-CUGGGa------------UAGGGcCCGUCa---CUG- -5' |
|||||||
9174 | 3' | -58.5 | NC_002512.2 | + | 225501 | 0.68 | 0.821267 |
Target: 5'- aCGGGGccGCCgCggggGUCCCGGGCuucgcgGACg -3' miRNA: 3'- aGCCUC--UGG-Ga---UAGGGCCCGuca---CUG- -5' |
|||||||
9174 | 3' | -58.5 | NC_002512.2 | + | 120335 | 0.68 | 0.821267 |
Target: 5'- gCGGAGAUCCgGUCCUgcacccagaaggGGGUguacgugcacgaGGUGACg -3' miRNA: 3'- aGCCUCUGGGaUAGGG------------CCCG------------UCACUG- -5' |
|||||||
9174 | 3' | -58.5 | NC_002512.2 | + | 111091 | 0.68 | 0.821267 |
Target: 5'- aCGGGGGCCCacagcUCCCGcccggcGGCGGaGGCg -3' miRNA: 3'- aGCCUCUGGGau---AGGGC------CCGUCaCUG- -5' |
|||||||
9174 | 3' | -58.5 | NC_002512.2 | + | 105815 | 0.68 | 0.812998 |
Target: 5'- gCGGAGAagCC---CCCGGGCAG-GGCc -3' miRNA: 3'- aGCCUCUg-GGauaGGGCCCGUCaCUG- -5' |
|||||||
9174 | 3' | -58.5 | NC_002512.2 | + | 161208 | 0.68 | 0.796017 |
Target: 5'- cUGGAGGCCCUGUCCaaGGUuaUGAa -3' miRNA: 3'- aGCCUCUGGGAUAGGgcCCGucACUg -5' |
|||||||
9174 | 3' | -58.5 | NC_002512.2 | + | 33019 | 0.68 | 0.793421 |
Target: 5'- uUCGGGGGCgCCUGUgacacggguugggaaCGGGguGUGGCu -3' miRNA: 3'- -AGCCUCUG-GGAUAgg-------------GCCCguCACUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home