miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9174 3' -58.5 NC_002512.2 + 191662 0.66 0.900496
Target:  5'- gCGGAGACguCCgcGUCCCGgGGCuG-GGCg -3'
miRNA:   3'- aGCCUCUG--GGa-UAGGGC-CCGuCaCUG- -5'
9174 3' -58.5 NC_002512.2 + 180033 0.66 0.894279
Target:  5'- cUCGG-GAUCUccgAUCCCaGGCGGUG-Cg -3'
miRNA:   3'- -AGCCuCUGGGa--UAGGGcCCGUCACuG- -5'
9174 3' -58.5 NC_002512.2 + 193577 0.66 0.885883
Target:  5'- gUGGGGAUCUcAUCCUccgcggggacgacaGGGgAGUGACg -3'
miRNA:   3'- aGCCUCUGGGaUAGGG--------------CCCgUCACUG- -5'
9174 3' -58.5 NC_002512.2 + 128392 0.66 0.881218
Target:  5'- gCGGcGGACCCcGUCUCGaGCccGGUGGCg -3'
miRNA:   3'- aGCC-UCUGGGaUAGGGCcCG--UCACUG- -5'
9174 3' -58.5 NC_002512.2 + 114157 0.66 0.881218
Target:  5'- -aGGAcGACCCgggCCCGGuccuccuCGGUGGCg -3'
miRNA:   3'- agCCU-CUGGGauaGGGCCc------GUCACUG- -5'
9174 3' -58.5 NC_002512.2 + 165653 0.66 0.874381
Target:  5'- uUCGGGGGCCU--UCCCGaGGCcgAGguccucgaUGACa -3'
miRNA:   3'- -AGCCUCUGGGauAGGGC-CCG--UC--------ACUG- -5'
9174 3' -58.5 NC_002512.2 + 218635 0.67 0.867347
Target:  5'- gUCGG-GACCCUGUCgCGcccGGCGGacggaGGCg -3'
miRNA:   3'- -AGCCuCUGGGAUAGgGC---CCGUCa----CUG- -5'
9174 3' -58.5 NC_002512.2 + 153227 0.67 0.860118
Target:  5'- cCGGuucCCCcGUCCCGGGCucccUGGCa -3'
miRNA:   3'- aGCCucuGGGaUAGGGCCCGuc--ACUG- -5'
9174 3' -58.5 NC_002512.2 + 109053 0.67 0.860118
Target:  5'- cUCGGgggacgaccGGACCCgccgcGUCCCGGGUccgAGaGACc -3'
miRNA:   3'- -AGCC---------UCUGGGa----UAGGGCCCG---UCaCUG- -5'
9174 3' -58.5 NC_002512.2 + 159560 0.67 0.848164
Target:  5'- aCGGugauccaucucuaccGGACCCUGUaCCCGGcuuUGGUGGCg -3'
miRNA:   3'- aGCC---------------UCUGGGAUA-GGGCCc--GUCACUG- -5'
9174 3' -58.5 NC_002512.2 + 92812 0.67 0.845102
Target:  5'- cCGG-GGCCUguUCCCGGGCGc-GGCg -3'
miRNA:   3'- aGCCuCUGGGauAGGGCCCGUcaCUG- -5'
9174 3' -58.5 NC_002512.2 + 128428 0.67 0.837326
Target:  5'- cCGGAG-CCCUccUCgCGGGCGGccaUGGCc -3'
miRNA:   3'- aGCCUCuGGGAu-AGgGCCCGUC---ACUG- -5'
9174 3' -58.5 NC_002512.2 + 173537 0.67 0.829378
Target:  5'- gUCGG-GGCCgUcugCCCGGGCuGUGcCg -3'
miRNA:   3'- -AGCCuCUGGgAua-GGGCCCGuCACuG- -5'
9174 3' -58.5 NC_002512.2 + 99640 0.67 0.826153
Target:  5'- cUCGGAgGGCCCggcgcccgagccgAUCCCcGGCAGcucgGGCg -3'
miRNA:   3'- -AGCCU-CUGGGa------------UAGGGcCCGUCa---CUG- -5'
9174 3' -58.5 NC_002512.2 + 111091 0.68 0.821267
Target:  5'- aCGGGGGCCCacagcUCCCGcccggcGGCGGaGGCg -3'
miRNA:   3'- aGCCUCUGGGau---AGGGC------CCGUCaCUG- -5'
9174 3' -58.5 NC_002512.2 + 120335 0.68 0.821267
Target:  5'- gCGGAGAUCCgGUCCUgcacccagaaggGGGUguacgugcacgaGGUGACg -3'
miRNA:   3'- aGCCUCUGGGaUAGGG------------CCCG------------UCACUG- -5'
9174 3' -58.5 NC_002512.2 + 225501 0.68 0.821267
Target:  5'- aCGGGGccGCCgCggggGUCCCGGGCuucgcgGACg -3'
miRNA:   3'- aGCCUC--UGG-Ga---UAGGGCCCGuca---CUG- -5'
9174 3' -58.5 NC_002512.2 + 105815 0.68 0.812998
Target:  5'- gCGGAGAagCC---CCCGGGCAG-GGCc -3'
miRNA:   3'- aGCCUCUg-GGauaGGGCCCGUCaCUG- -5'
9174 3' -58.5 NC_002512.2 + 161208 0.68 0.796017
Target:  5'- cUGGAGGCCCUGUCCaaGGUuaUGAa -3'
miRNA:   3'- aGCCUCUGGGAUAGGgcCCGucACUg -5'
9174 3' -58.5 NC_002512.2 + 33019 0.68 0.793421
Target:  5'- uUCGGGGGCgCCUGUgacacggguugggaaCGGGguGUGGCu -3'
miRNA:   3'- -AGCCUCUG-GGAUAgg-------------GCCCguCACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.