miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9175 3' -58.5 NC_002512.2 + 227967 0.7 0.734857
Target:  5'- -gAGCCggagaggagGGCCCCggcgCCGAGGgCCGAg -3'
miRNA:   3'- cgUUGG---------CCGGGGaua-GGCUCCaGGCU- -5'
9175 3' -58.5 NC_002512.2 + 227877 0.68 0.835988
Target:  5'- uGguGCCGGCUCaggcgacgcgggcgaGUCCGAGG-CCGGa -3'
miRNA:   3'- -CguUGGCCGGGga-------------UAGGCUCCaGGCU- -5'
9175 3' -58.5 NC_002512.2 + 226481 0.67 0.881742
Target:  5'- -aGGCCGGggcccgggcgcuCCCCUcgCCGcGGGUCCu- -3'
miRNA:   3'- cgUUGGCC------------GGGGAuaGGC-UCCAGGcu -5'
9175 3' -58.5 NC_002512.2 + 223008 0.71 0.665403
Target:  5'- aGCGGCaCGGCCCagggacggGUCgucgcccacuccggCGAGGUCCGGg -3'
miRNA:   3'- -CGUUG-GCCGGGga------UAG--------------GCUCCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 222143 0.66 0.912497
Target:  5'- cGCc-CCGGCUCCgcccCCGAGGaCCGc -3'
miRNA:   3'- -CGuuGGCCGGGGaua-GGCUCCaGGCu -5'
9175 3' -58.5 NC_002512.2 + 220019 0.67 0.846019
Target:  5'- uCGAgaGGCCgCUccGUCuCGGGGUCCGGg -3'
miRNA:   3'- cGUUggCCGGgGA--UAG-GCUCCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 219781 0.69 0.762332
Target:  5'- cGCGGCCGGCCCgg--CCGGGGaCacaGAu -3'
miRNA:   3'- -CGUUGGCCGGGgauaGGCUCCaGg--CU- -5'
9175 3' -58.5 NC_002512.2 + 219336 0.66 0.912497
Target:  5'- gGCGuggcccGCCGGCugCCCggcGUCCGcgAGGUCCu- -3'
miRNA:   3'- -CGU------UGGCCG--GGGa--UAGGC--UCCAGGcu -5'
9175 3' -58.5 NC_002512.2 + 219220 0.69 0.762332
Target:  5'- -gGGCCGGCCUCgg--CGAGGUCgGGa -3'
miRNA:   3'- cgUUGGCCGGGGauagGCUCCAGgCU- -5'
9175 3' -58.5 NC_002512.2 + 218969 0.67 0.874291
Target:  5'- cGUcGCCGGCUgggagguCCggcCCGGGGUCCGc -3'
miRNA:   3'- -CGuUGGCCGG-------GGauaGGCUCCAGGCu -5'
9175 3' -58.5 NC_002512.2 + 218443 0.68 0.830469
Target:  5'- ---cCCGGCCCCcGUCCGcGGcGUCCc- -3'
miRNA:   3'- cguuGGCCGGGGaUAGGC-UC-CAGGcu -5'
9175 3' -58.5 NC_002512.2 + 215113 0.69 0.788872
Target:  5'- cGCGGCCGaCCgCCagaacggCCGGGGUCCGc -3'
miRNA:   3'- -CGUUGGCcGG-GGaua----GGCUCCAGGCu -5'
9175 3' -58.5 NC_002512.2 + 214788 0.69 0.753267
Target:  5'- cGCccuCCGGguCCCCUGgucgCgGAGGUCCGu -3'
miRNA:   3'- -CGuu-GGCC--GGGGAUa---GgCUCCAGGCu -5'
9175 3' -58.5 NC_002512.2 + 210063 0.66 0.906764
Target:  5'- uCGACCuGGCCCUcaUGUCCGucGGacagaUCCGGa -3'
miRNA:   3'- cGUUGG-CCGGGG--AUAGGCu-CC-----AGGCU- -5'
9175 3' -58.5 NC_002512.2 + 209036 0.68 0.830469
Target:  5'- gGCGGCCGcGUCCCggagcgauUCCGAcGGcuccUCCGAc -3'
miRNA:   3'- -CGUUGGC-CGGGGau------AGGCU-CC----AGGCU- -5'
9175 3' -58.5 NC_002512.2 + 204853 0.67 0.881742
Target:  5'- gGCggUCGGUCCUcg-UgGAGGUCCGc -3'
miRNA:   3'- -CGuuGGCCGGGGauaGgCUCCAGGCu -5'
9175 3' -58.5 NC_002512.2 + 201846 0.71 0.648935
Target:  5'- cGCGGCCGGCagcucgCCUGgggcCUGcGGUCCGAg -3'
miRNA:   3'- -CGUUGGCCGg-----GGAUa---GGCuCCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 201065 0.73 0.552436
Target:  5'- uCGACCgGGCCCacaUGUgCGGGGUCUGGg -3'
miRNA:   3'- cGUUGG-CCGGGg--AUAgGCUCCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 199929 0.67 0.881742
Target:  5'- cGCGGCCGGCCgCCgcucaCCGGcuGUCCa- -3'
miRNA:   3'- -CGUUGGCCGG-GGaua--GGCUc-CAGGcu -5'
9175 3' -58.5 NC_002512.2 + 198551 0.68 0.805943
Target:  5'- cGUAGCCGGCCagggcgCUGUCC-AGGUCg-- -3'
miRNA:   3'- -CGUUGGCCGGg-----GAUAGGcUCCAGgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.