miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9178 3' -61.1 NC_002512.2 + 170049 0.7 0.565736
Target:  5'- uGGccauGGCCGCCGCcgcCGCGGCCGCc--- -3'
miRNA:   3'- uCC----CCGGUGGUGu--GUGCCGGCGaugu -5'
9178 3' -61.1 NC_002512.2 + 147628 0.7 0.565736
Target:  5'- cGGGGGCgACgACGacggcgGCGGCCGCUcccGCu -3'
miRNA:   3'- -UCCCCGgUGgUGUg-----UGCCGGCGA---UGu -5'
9178 3' -61.1 NC_002512.2 + 150519 0.7 0.565736
Target:  5'- cGGGGuGCaguuCCACGCgGCGGCCGCg--- -3'
miRNA:   3'- -UCCC-CGgu--GGUGUG-UGCCGGCGaugu -5'
9178 3' -61.1 NC_002512.2 + 41456 0.69 0.575303
Target:  5'- gAGaGGGCCGCgAgAC-UGGCCGCUuuACAg -3'
miRNA:   3'- -UC-CCCGGUGgUgUGuGCCGGCGA--UGU- -5'
9178 3' -61.1 NC_002512.2 + 157821 0.69 0.575303
Target:  5'- cGGGGGCCgGCCGCGaccuucuacaaGCGGCaCGC-GCAg -3'
miRNA:   3'- -UCCCCGG-UGGUGUg----------UGCCG-GCGaUGU- -5'
9178 3' -61.1 NC_002512.2 + 205032 0.69 0.584908
Target:  5'- cGGGGCCgcguccGCCGCcgAC-CGGCCGCggGCc -3'
miRNA:   3'- uCCCCGG------UGGUG--UGuGCCGGCGa-UGu -5'
9178 3' -61.1 NC_002512.2 + 222421 0.69 0.584908
Target:  5'- cGGGGGCCggcaGCCGCGcCGCGGCUucccccggGCcGCGg -3'
miRNA:   3'- -UCCCCGG----UGGUGU-GUGCCGG--------CGaUGU- -5'
9178 3' -61.1 NC_002512.2 + 99114 0.69 0.594543
Target:  5'- -cGGGCCGCUccaagagaucGCGCACGGCCGg---- -3'
miRNA:   3'- ucCCCGGUGG----------UGUGUGCCGGCgaugu -5'
9178 3' -61.1 NC_002512.2 + 156846 0.69 0.594543
Target:  5'- cGGGGGCCGCUGCugcCACacCUGCUACGc -3'
miRNA:   3'- -UCCCCGGUGGUGu--GUGccGGCGAUGU- -5'
9178 3' -61.1 NC_002512.2 + 225502 0.69 0.601302
Target:  5'- cGGGGCCGCCGCGggggucccgggcuuCGCGGaCGggACGg -3'
miRNA:   3'- uCCCCGGUGGUGU--------------GUGCCgGCgaUGU- -5'
9178 3' -61.1 NC_002512.2 + 196448 0.69 0.604202
Target:  5'- cGGGGCCAUggaaUAC-CugGGCUGCggcgACAu -3'
miRNA:   3'- uCCCCGGUG----GUGuGugCCGGCGa---UGU- -5'
9178 3' -61.1 NC_002512.2 + 184808 0.69 0.604202
Target:  5'- cGGGGagaCCcuuCCGCGC-CGGCCGCgACAc -3'
miRNA:   3'- uCCCC---GGu--GGUGUGuGCCGGCGaUGU- -5'
9178 3' -61.1 NC_002512.2 + 138956 0.69 0.61388
Target:  5'- cGGcGGCgGCCGCGCcggccccguucGCGGCCGCc--- -3'
miRNA:   3'- uCC-CCGgUGGUGUG-----------UGCCGGCGaugu -5'
9178 3' -61.1 NC_002512.2 + 221431 0.69 0.61388
Target:  5'- --cGGCCGCCAUGCggaccGCGGCCGggGCGc -3'
miRNA:   3'- uccCCGGUGGUGUG-----UGCCGGCgaUGU- -5'
9178 3' -61.1 NC_002512.2 + 92083 0.69 0.623571
Target:  5'- cGGacGGCCGCCggACGCGCGGcCCGCcgaGCGc -3'
miRNA:   3'- uCC--CCGGUGG--UGUGUGCC-GGCGa--UGU- -5'
9178 3' -61.1 NC_002512.2 + 149160 0.68 0.633267
Target:  5'- cGGGGCCgguGCCGCcCGCGGgcCCGC-GCGc -3'
miRNA:   3'- uCCCCGG---UGGUGuGUGCC--GGCGaUGU- -5'
9178 3' -61.1 NC_002512.2 + 127365 0.68 0.642963
Target:  5'- cGGGGGCCugACCcCcgACGGCCGCgACu -3'
miRNA:   3'- -UCCCCGG--UGGuGugUGCCGGCGaUGu -5'
9178 3' -61.1 NC_002512.2 + 130788 0.68 0.642963
Target:  5'- aGGaGGGCCGCCgacgcgcaGCACGCGGUgGCc--- -3'
miRNA:   3'- -UC-CCCGGUGG--------UGUGUGCCGgCGaugu -5'
9178 3' -61.1 NC_002512.2 + 200771 0.68 0.642963
Target:  5'- uGGuGGUCGCCAuCGcCAUGGCCGCcGCc -3'
miRNA:   3'- uCC-CCGGUGGU-GU-GUGCCGGCGaUGu -5'
9178 3' -61.1 NC_002512.2 + 159119 0.68 0.642963
Target:  5'- cGGGaucuGCC-CCAgaaGCGCGGCCGCUcCAa -3'
miRNA:   3'- uCCC----CGGuGGUg--UGUGCCGGCGAuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.