miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9178 5' -57.9 NC_002512.2 + 131370 0.66 0.888749
Target:  5'- cGGCGCGGUGGCUcucGCAGUaGGCCaGCa- -3'
miRNA:   3'- -CUGUGUCGUCGAc--CGUUA-CCGG-CGca -5'
9178 5' -57.9 NC_002512.2 + 220493 0.66 0.874999
Target:  5'- -uCACccGCAGCgaGGCcGUGGCCuGCGUc -3'
miRNA:   3'- cuGUGu-CGUCGa-CCGuUACCGG-CGCA- -5'
9178 5' -57.9 NC_002512.2 + 222405 0.66 0.874999
Target:  5'- aGCGCcGCGGCUucGGCGggGGCCgGCa- -3'
miRNA:   3'- cUGUGuCGUCGA--CCGUuaCCGG-CGca -5'
9178 5' -57.9 NC_002512.2 + 116537 0.66 0.874999
Target:  5'- aGACGugcCAGCuGCUGGgGAUgaacGGCCGCc- -3'
miRNA:   3'- -CUGU---GUCGuCGACCgUUA----CCGGCGca -5'
9178 5' -57.9 NC_002512.2 + 122050 0.66 0.858159
Target:  5'- aGAUcCuGCGGCUGGCGgugagcaggcugaaGUGGCUGCc- -3'
miRNA:   3'- -CUGuGuCGUCGACCGU--------------UACCGGCGca -5'
9178 5' -57.9 NC_002512.2 + 74644 0.67 0.852825
Target:  5'- cGACGCcGCGaCgGGCGGgacGGCCGCGg -3'
miRNA:   3'- -CUGUGuCGUcGaCCGUUa--CCGGCGCa -5'
9178 5' -57.9 NC_002512.2 + 146897 0.67 0.852825
Target:  5'- aGGCGCAGCuGgaGGC---GGCCGaCGUc -3'
miRNA:   3'- -CUGUGUCGuCgaCCGuuaCCGGC-GCA- -5'
9178 5' -57.9 NC_002512.2 + 99511 0.67 0.852825
Target:  5'- --gACGG-GGUUGGCGGccUGGCCGCGc -3'
miRNA:   3'- cugUGUCgUCGACCGUU--ACCGGCGCa -5'
9178 5' -57.9 NC_002512.2 + 217131 0.67 0.837073
Target:  5'- cGGCgGCAGCAGCgGGCccagcuUGcGCCGCa- -3'
miRNA:   3'- -CUG-UGUCGUCGaCCGuu----AC-CGGCGca -5'
9178 5' -57.9 NC_002512.2 + 222480 0.67 0.828925
Target:  5'- -uCGCGGUcGUcaacgUGGCGGUGGCCGCc- -3'
miRNA:   3'- cuGUGUCGuCG-----ACCGUUACCGGCGca -5'
9178 5' -57.9 NC_002512.2 + 92578 0.67 0.828925
Target:  5'- cGACGCcGCGGCcGGgAggGGCgGCGg -3'
miRNA:   3'- -CUGUGuCGUCGaCCgUuaCCGgCGCa -5'
9178 5' -57.9 NC_002512.2 + 226703 0.67 0.828925
Target:  5'- -cCGCGGCGGCgucGaGCGAcgggaGGCCGCGg -3'
miRNA:   3'- cuGUGUCGUCGa--C-CGUUa----CCGGCGCa -5'
9178 5' -57.9 NC_002512.2 + 181585 0.67 0.820606
Target:  5'- --uGCGGCGGCaggGGCGGcgGGuCCGCGa -3'
miRNA:   3'- cugUGUCGUCGa--CCGUUa-CC-GGCGCa -5'
9178 5' -57.9 NC_002512.2 + 169075 0.68 0.80348
Target:  5'- -cCGCGGCGGC-GGCGucgcGGCcCGCGUc -3'
miRNA:   3'- cuGUGUCGUCGaCCGUua--CCG-GCGCA- -5'
9178 5' -57.9 NC_002512.2 + 227606 0.68 0.80348
Target:  5'- -cCGCAGCGGCcggagGGCGGgcGGCgGCGg -3'
miRNA:   3'- cuGUGUCGUCGa----CCGUUa-CCGgCGCa -5'
9178 5' -57.9 NC_002512.2 + 207168 0.68 0.80348
Target:  5'- -cCGCGGUAGCUGuuGAUGuGCCGCc- -3'
miRNA:   3'- cuGUGUCGUCGACcgUUAC-CGGCGca -5'
9178 5' -57.9 NC_002512.2 + 192607 0.68 0.794691
Target:  5'- cGGCGCGcGCGGCgGGCGAcGGCgGCc- -3'
miRNA:   3'- -CUGUGU-CGUCGaCCGUUaCCGgCGca -5'
9178 5' -57.9 NC_002512.2 + 217023 0.68 0.789348
Target:  5'- cGGCuuCAGCAGCcuguccagcgucacGGCGcaGGCCGCGUg -3'
miRNA:   3'- -CUGu-GUCGUCGa-------------CCGUuaCCGGCGCA- -5'
9178 5' -57.9 NC_002512.2 + 170333 0.68 0.776696
Target:  5'- --aGCAGguGCaGGaacuCGGUGGCCGCGa -3'
miRNA:   3'- cugUGUCguCGaCC----GUUACCGGCGCa -5'
9178 5' -57.9 NC_002512.2 + 110720 0.68 0.776696
Target:  5'- uGCAUGGC-GUUGGCcagGGCCGUGUu -3'
miRNA:   3'- cUGUGUCGuCGACCGuuaCCGGCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.