miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9179 3' -53.3 NC_002512.2 + 227239 0.66 0.99083
Target:  5'- -aGGCGCGGCgGAcggGcGGGCAUCa- -3'
miRNA:   3'- ggCCGCGCCGgUUuaaC-CUUGUAGgg -5'
9179 3' -53.3 NC_002512.2 + 103698 0.66 0.99083
Target:  5'- gCGGaCGCGGCgGGAggGGGcGCcgCCa -3'
miRNA:   3'- gGCC-GCGCCGgUUUaaCCU-UGuaGGg -5'
9179 3' -53.3 NC_002512.2 + 114122 0.66 0.99083
Target:  5'- aCGGCaCGGCCAccGGUccgaGGAGCAgCCg -3'
miRNA:   3'- gGCCGcGCCGGU--UUAa---CCUUGUaGGg -5'
9179 3' -53.3 NC_002512.2 + 208670 0.66 0.99083
Target:  5'- cCCGG-GCGGCgucccgGGGGCcgcuGUCCCu -3'
miRNA:   3'- -GGCCgCGCCGguuuaaCCUUG----UAGGG- -5'
9179 3' -53.3 NC_002512.2 + 219614 0.66 0.99083
Target:  5'- cCCGGCuucuCGGgCAuc--GGggUGUCCCg -3'
miRNA:   3'- -GGCCGc---GCCgGUuuaaCCuuGUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 221170 0.66 0.990351
Target:  5'- gCGcGCGCGGCCGAccgaccucggagUGG-ACGggaCCCg -3'
miRNA:   3'- gGC-CGCGCCGGUUua----------ACCuUGUa--GGG- -5'
9179 3' -53.3 NC_002512.2 + 94281 0.66 0.989596
Target:  5'- gCUGGCGUccacGGCCGg---GGAGCGgucgUCCa -3'
miRNA:   3'- -GGCCGCG----CCGGUuuaaCCUUGUa---GGG- -5'
9179 3' -53.3 NC_002512.2 + 108762 0.66 0.989596
Target:  5'- gCGGCGCGGgCGAuccGGcuguCGUCaCCg -3'
miRNA:   3'- gGCCGCGCCgGUUuaaCCuu--GUAG-GG- -5'
9179 3' -53.3 NC_002512.2 + 111177 0.66 0.989596
Target:  5'- gCCGGCgaGCGGCaggcggGGGAag-CCCa -3'
miRNA:   3'- -GGCCG--CGCCGguuuaaCCUUguaGGG- -5'
9179 3' -53.3 NC_002512.2 + 227984 0.66 0.989596
Target:  5'- cCCGGCGCcgagGGCCGAGggccGGAGCc---- -3'
miRNA:   3'- -GGCCGCG----CCGGUUUaa--CCUUGuaggg -5'
9179 3' -53.3 NC_002512.2 + 119563 0.66 0.989465
Target:  5'- aCCGG-GCGGaCCGcg--GGAGCccggcggGUCCCc -3'
miRNA:   3'- -GGCCgCGCC-GGUuuaaCCUUG-------UAGGG- -5'
9179 3' -53.3 NC_002512.2 + 87624 0.66 0.989201
Target:  5'- cCCGGCcCGGacgacgaccggaucCCAGAUcGGAG-AUCCCg -3'
miRNA:   3'- -GGCCGcGCC--------------GGUUUAaCCUUgUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 226569 0.66 0.988235
Target:  5'- uCCGGCucgcgcucccCGGCCAGGagGGcGCggCCCg -3'
miRNA:   3'- -GGCCGc---------GCCGGUUUaaCCuUGuaGGG- -5'
9179 3' -53.3 NC_002512.2 + 176686 0.66 0.988235
Target:  5'- aCUGGCGCGucGCCuug-UGGugu-UCCCa -3'
miRNA:   3'- -GGCCGCGC--CGGuuuaACCuuguAGGG- -5'
9179 3' -53.3 NC_002512.2 + 208434 0.66 0.988092
Target:  5'- cCCGGCGcCGGCCcccgaucGAGUcGG-ACGUCg- -3'
miRNA:   3'- -GGCCGC-GCCGG-------UUUAaCCuUGUAGgg -5'
9179 3' -53.3 NC_002512.2 + 160903 0.67 0.986741
Target:  5'- gCGGgGCGGCCGGGgcaaGGGACGc--- -3'
miRNA:   3'- gGCCgCGCCGGUUUaa--CCUUGUaggg -5'
9179 3' -53.3 NC_002512.2 + 95832 0.67 0.986741
Target:  5'- gUGGCGaCGGCCcgcagGAGgccgGGGGCGgcguccUCCCa -3'
miRNA:   3'- gGCCGC-GCCGG-----UUUaa--CCUUGU------AGGG- -5'
9179 3' -53.3 NC_002512.2 + 221251 0.67 0.986741
Target:  5'- gCCGGcCGCGGCgGAAgucggGGGACGc--- -3'
miRNA:   3'- -GGCC-GCGCCGgUUUaa---CCUUGUaggg -5'
9179 3' -53.3 NC_002512.2 + 217852 0.67 0.986741
Target:  5'- gCGGCaGCGGucugcCCGGcgUGGGgagcGCGUCCg -3'
miRNA:   3'- gGCCG-CGCC-----GGUUuaACCU----UGUAGGg -5'
9179 3' -53.3 NC_002512.2 + 212444 0.67 0.986741
Target:  5'- gCCGGC-CGGCCGcgaccgccgcGAggaGGGCAUCCg -3'
miRNA:   3'- -GGCCGcGCCGGU----------UUaacCUUGUAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.