miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 5' -61.5 NC_002512.2 + 5771 0.67 0.733652
Target:  5'- --uGUCCCGUCCGCUCaGAcGGUuCGGc -3'
miRNA:   3'- gccCAGGGCAGGUGAGgCU-CCA-GCCa -5'
9193 5' -61.5 NC_002512.2 + 151963 0.68 0.687517
Target:  5'- cCGGGUCuCCGUgaACggagaccggCCGuGGUCGGUu -3'
miRNA:   3'- -GCCCAG-GGCAggUGa--------GGCuCCAGCCA- -5'
9193 5' -61.5 NC_002512.2 + 135295 0.68 0.672503
Target:  5'- uCGGGcCCCaGUUCGCcuguccggcgguccCCGAGGUCGGc -3'
miRNA:   3'- -GCCCaGGG-CAGGUGa-------------GGCUCCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 93457 0.68 0.686581
Target:  5'- cCGGGUCCCcucguGUCCGgUCaugggauaccagaUGGGGUUGGUu -3'
miRNA:   3'- -GCCCAGGG-----CAGGUgAG-------------GCUCCAGCCA- -5'
9193 5' -61.5 NC_002512.2 + 19672 0.68 0.696851
Target:  5'- uCGGGUCCgCGUCUccguCUCgGAcgaucagacGGUCGGg -3'
miRNA:   3'- -GCCCAGG-GCAGGu---GAGgCU---------CCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 93854 0.68 0.706139
Target:  5'- aCGGGUCgCGgucUCCcUUCCGAGGUucucaCGGUu -3'
miRNA:   3'- -GCCCAGgGC---AGGuGAGGCUCCA-----GCCA- -5'
9193 5' -61.5 NC_002512.2 + 190213 0.68 0.687517
Target:  5'- uCGGGUCCUG-CCACaCUucGGUCGGc -3'
miRNA:   3'- -GCCCAGGGCaGGUGaGGcuCCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 151547 0.68 0.705212
Target:  5'- gGGGUCCCGUCCcgguCUcgccuucCCGAGaGcCGGc -3'
miRNA:   3'- gCCCAGGGCAGGu---GA-------GGCUC-CaGCCa -5'
9193 5' -61.5 NC_002512.2 + 202028 0.68 0.678143
Target:  5'- cCGGGUCCCccgCCGgUCCGGcucgcGGUCGuGUc -3'
miRNA:   3'- -GCCCAGGGca-GGUgAGGCU-----CCAGC-CA- -5'
9193 5' -61.5 NC_002512.2 + 159386 0.69 0.659305
Target:  5'- gCGGGUCCCG-CgGCgUCGGGG-CGGa -3'
miRNA:   3'- -GCCCAGGGCaGgUGaGGCUCCaGCCa -5'
9193 5' -61.5 NC_002512.2 + 152608 0.69 0.630925
Target:  5'- cCGGGUUUCGa--GCUCCGGGGcCGGg -3'
miRNA:   3'- -GCCCAGGGCaggUGAGGCUCCaGCCa -5'
9193 5' -61.5 NC_002512.2 + 195733 0.69 0.649855
Target:  5'- gGGGagCgGgaaCCGCUCCGAGGUCGu- -3'
miRNA:   3'- gCCCagGgCa--GGUGAGGCUCCAGCca -5'
9193 5' -61.5 NC_002512.2 + 218076 0.69 0.640393
Target:  5'- aGGGUguaCCCGUcCCugUCCGuGGggaagCGGg -3'
miRNA:   3'- gCCCA---GGGCA-GGugAGGCuCCa----GCCa -5'
9193 5' -61.5 NC_002512.2 + 218494 0.69 0.630925
Target:  5'- gCGGGU--CGUCCGCgUCCGAGccGUCGGa -3'
miRNA:   3'- -GCCCAggGCAGGUG-AGGCUC--CAGCCa -5'
9193 5' -61.5 NC_002512.2 + 37309 0.69 0.621458
Target:  5'- gCGGGa-CgGUCCGCUCCGAGGcccCGGc -3'
miRNA:   3'- -GCCCagGgCAGGUGAGGCUCCa--GCCa -5'
9193 5' -61.5 NC_002512.2 + 221571 0.69 0.611053
Target:  5'- cCGGcUCCCGgccCUGCUCCGucgacccggagggGGGUCGGUg -3'
miRNA:   3'- -GCCcAGGGCa--GGUGAGGC-------------UCCAGCCA- -5'
9193 5' -61.5 NC_002512.2 + 127819 0.69 0.611998
Target:  5'- uCGGGUCCCG---GCUCCGGGaggucGUCGGc -3'
miRNA:   3'- -GCCCAGGGCaggUGAGGCUC-----CAGCCa -5'
9193 5' -61.5 NC_002512.2 + 194634 0.7 0.555708
Target:  5'- gCGGGggaccugCCCGUCCucuuCUCCGAucGGgCGGUc -3'
miRNA:   3'- -GCCCa------GGGCAGGu---GAGGCU--CCaGCCA- -5'
9193 5' -61.5 NC_002512.2 + 166612 0.7 0.593123
Target:  5'- gGGGUCCCagggcUCCGCgUCCGGGaacGUCGGc -3'
miRNA:   3'- gCCCAGGGc----AGGUG-AGGCUC---CAGCCa -5'
9193 5' -61.5 NC_002512.2 + 200037 0.7 0.602551
Target:  5'- gCGGGUucUCCGgaucCCGCUCCagauagugcaucGGGGUCGGg -3'
miRNA:   3'- -GCCCA--GGGCa---GGUGAGG------------CUCCAGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.