miRNA display CGI


Results 21 - 40 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9198 3' -62.9 NC_002512.2 + 185504 0.71 0.439812
Target:  5'- -aCG-CCGGGCuGCgCGgGGGCCUGCc -3'
miRNA:   3'- aaGCuGGCCCG-CGaGCgCCUGGACGc -5'
9198 3' -62.9 NC_002512.2 + 128834 0.7 0.444875
Target:  5'- gUCGGCgcagcugcaccgcuCGGGCGCcgCGCGGGCCcuggugcUGCGc -3'
miRNA:   3'- aAGCUG--------------GCCCGCGa-GCGCCUGG-------ACGC- -5'
9198 3' -62.9 NC_002512.2 + 18142 0.7 0.448269
Target:  5'- -gCGcCCGGGcCGCgUCGCGGGCCagGCc -3'
miRNA:   3'- aaGCuGGCCC-GCG-AGCGCCUGGa-CGc -5'
9198 3' -62.9 NC_002512.2 + 128030 0.7 0.448269
Target:  5'- -gCGGCCGGGuCGCUCGCuG-CCUcugGCGg -3'
miRNA:   3'- aaGCUGGCCC-GCGAGCGcCuGGA---CGC- -5'
9198 3' -62.9 NC_002512.2 + 195850 0.7 0.456815
Target:  5'- cUCGAgCaaccGGCGCUCGCGGaACCUGa- -3'
miRNA:   3'- aAGCUgGc---CCGCGAGCGCC-UGGACgc -5'
9198 3' -62.9 NC_002512.2 + 149003 0.7 0.474165
Target:  5'- -cCGGCCGGGgggcCGC-CGCGGACC-GCc -3'
miRNA:   3'- aaGCUGGCCC----GCGaGCGCCUGGaCGc -5'
9198 3' -62.9 NC_002512.2 + 8157 0.7 0.474165
Target:  5'- gUCcGCCaGGCGCUCGgGGAUCUcgGCGu -3'
miRNA:   3'- aAGcUGGcCCGCGAGCgCCUGGA--CGC- -5'
9198 3' -62.9 NC_002512.2 + 41785 0.7 0.479435
Target:  5'- gUCGACgCGGGCGaccgaguugccguuCUCGCGGACgacgauguccuggCUGUGg -3'
miRNA:   3'- aAGCUG-GCCCGC--------------GAGCGCCUG-------------GACGC- -5'
9198 3' -62.9 NC_002512.2 + 95902 0.7 0.482963
Target:  5'- -cCGGCCGGGUGC-CGacgaGGACCU-CGa -3'
miRNA:   3'- aaGCUGGCCCGCGaGCg---CCUGGAcGC- -5'
9198 3' -62.9 NC_002512.2 + 168896 0.7 0.482963
Target:  5'- --aGGuCCGGGUGCUCGCGGAagacguCgUGCa -3'
miRNA:   3'- aagCU-GGCCCGCGAGCGCCU------GgACGc -5'
9198 3' -62.9 NC_002512.2 + 219048 0.69 0.50079
Target:  5'- gUCGGCCGcGGCGCggggcucccCGCGGGCUU-CGa -3'
miRNA:   3'- aAGCUGGC-CCGCGa--------GCGCCUGGAcGC- -5'
9198 3' -62.9 NC_002512.2 + 152837 0.69 0.50079
Target:  5'- --gGAUCGGGC-CUCGCGGuCCccagGCGg -3'
miRNA:   3'- aagCUGGCCCGcGAGCGCCuGGa---CGC- -5'
9198 3' -62.9 NC_002512.2 + 139141 0.69 0.509812
Target:  5'- cUCGGCCGGGuCGUUCGCcaaGGACUgGUu -3'
miRNA:   3'- aAGCUGGCCC-GCGAGCG---CCUGGaCGc -5'
9198 3' -62.9 NC_002512.2 + 149162 0.69 0.509812
Target:  5'- --gGGCCGGuGcCGCcCGCGGGCCcGCGc -3'
miRNA:   3'- aagCUGGCC-C-GCGaGCGCCUGGaCGC- -5'
9198 3' -62.9 NC_002512.2 + 79213 0.69 0.509812
Target:  5'- -gCGACCGccGCGCcCGCGGACCU-CGa -3'
miRNA:   3'- aaGCUGGCc-CGCGaGCGCCUGGAcGC- -5'
9198 3' -62.9 NC_002512.2 + 30420 0.69 0.510718
Target:  5'- --gGACgCGGGCGUcgucgcggcccugaaCGCGGGCCUGCc -3'
miRNA:   3'- aagCUG-GCCCGCGa--------------GCGCCUGGACGc -5'
9198 3' -62.9 NC_002512.2 + 45196 0.69 0.518901
Target:  5'- cUCGACCGGGaccgGCggCGCGGACg-GCc -3'
miRNA:   3'- aAGCUGGCCCg---CGa-GCGCCUGgaCGc -5'
9198 3' -62.9 NC_002512.2 + 87834 0.69 0.527135
Target:  5'- -cCGGCCGGGCGUcgggcccUCGCGGcgggucGCCgGCc -3'
miRNA:   3'- aaGCUGGCCCGCG-------AGCGCC------UGGaCGc -5'
9198 3' -62.9 NC_002512.2 + 119082 0.69 0.527135
Target:  5'- cUCGACCGGucGCGCgaggaggUGCGGGCggccucggcgcagCUGCGg -3'
miRNA:   3'- aAGCUGGCC--CGCGa------GCGCCUG-------------GACGC- -5'
9198 3' -62.9 NC_002512.2 + 174495 0.69 0.528053
Target:  5'- cUCGGCgGGGCGCUgG-GGuuCUGCa -3'
miRNA:   3'- aAGCUGgCCCGCGAgCgCCugGACGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.