Results 1 - 20 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9198 | 3' | -62.9 | NC_002512.2 | + | 13144 | 1.05 | 0.002147 |
Target: 5'- gUUCGACCGGGCGCUCGCGGACCUGCGc -3' miRNA: 3'- -AAGCUGGCCCGCGAGCGCCUGGACGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 128294 | 0.77 | 0.185792 |
Target: 5'- cUCGugCGGGUGCacgcccgagUCGCGGcACCUGCu -3' miRNA: 3'- aAGCugGCCCGCG---------AGCGCC-UGGACGc -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 45409 | 0.76 | 0.199209 |
Target: 5'- cUCGugCGGGCGCUCGaCGGcggcgccgGCCgcgGCGa -3' miRNA: 3'- aAGCugGCCCGCGAGC-GCC--------UGGa--CGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 201847 | 0.75 | 0.255784 |
Target: 5'- -gCGGCC-GGCaGCUCGCcugGGGCCUGCGg -3' miRNA: 3'- aaGCUGGcCCG-CGAGCG---CCUGGACGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 86112 | 0.75 | 0.261534 |
Target: 5'- aUgGAcCCGGGCGCggaggaggUCGCGGACCUGg- -3' miRNA: 3'- aAgCU-GGCCCGCG--------AGCGCCUGGACgc -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 6340 | 0.74 | 0.267387 |
Target: 5'- --gGACCGGGCGCggggccgGCGGGCC-GCGg -3' miRNA: 3'- aagCUGGCCCGCGag-----CGCCUGGaCGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 119179 | 0.74 | 0.273347 |
Target: 5'- -aCGACaCGa-CGCUCGUGGACCUGCGc -3' miRNA: 3'- aaGCUG-GCccGCGAGCGCCUGGACGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 195399 | 0.74 | 0.285584 |
Target: 5'- gUCGACCGGGaGCUCGUcuucucggGGACgUGCa -3' miRNA: 3'- aAGCUGGCCCgCGAGCG--------CCUGgACGc -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 13362 | 0.74 | 0.291863 |
Target: 5'- -aCGACuCGGGCGCguUCGUGGugCcGCGg -3' miRNA: 3'- aaGCUG-GCCCGCG--AGCGCCugGaCGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 120816 | 0.73 | 0.304744 |
Target: 5'- --gGACCuGGCGCgCGgGGACCUGCu -3' miRNA: 3'- aagCUGGcCCGCGaGCgCCUGGACGc -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 47297 | 0.73 | 0.311346 |
Target: 5'- -aCuGCCGGGCGaUCGCGGAgCUGCu -3' miRNA: 3'- aaGcUGGCCCGCgAGCGCCUgGACGc -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 81280 | 0.73 | 0.338837 |
Target: 5'- -aCGGCagggGGGCGgUC-CGGGCCUGCGg -3' miRNA: 3'- aaGCUGg---CCCGCgAGcGCCUGGACGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 109834 | 0.72 | 0.353229 |
Target: 5'- gUCGaaccGCCGGGCG-UCGgGGACCgGCGu -3' miRNA: 3'- aAGC----UGGCCCGCgAGCgCCUGGaCGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 89299 | 0.72 | 0.380975 |
Target: 5'- aUCGACgGGGCGUUCGCGacgugggacaugacGACCUuCGa -3' miRNA: 3'- aAGCUGgCCCGCGAGCGC--------------CUGGAcGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 124357 | 0.71 | 0.398149 |
Target: 5'- gUCGGCCGGGCaGUUCGgcugccaCGGcguCCUGCGc -3' miRNA: 3'- aAGCUGGCCCG-CGAGC-------GCCu--GGACGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 226484 | 0.71 | 0.406921 |
Target: 5'- -cCGGggcCCGGGCGCUccccucgcCGCGGGuCCUGCu -3' miRNA: 3'- aaGCU---GGCCCGCGA--------GCGCCU-GGACGc -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 129380 | 0.71 | 0.406921 |
Target: 5'- cUCGugCGGGUGCUCGaCG-ACC-GCGg -3' miRNA: 3'- aAGCugGCCCGCGAGC-GCcUGGaCGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 209954 | 0.71 | 0.426472 |
Target: 5'- cUCGACCGGGCGCggguccucaaggUCGCcaacggcuucccGGgguuccuccgcgaccGCCUGCGg -3' miRNA: 3'- aAGCUGGCCCGCG------------AGCG------------CC---------------UGGACGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 122624 | 0.71 | 0.431446 |
Target: 5'- cUCGGuCCGGGUGaaCGCGGACC-GCc -3' miRNA: 3'- aAGCU-GGCCCGCgaGCGCCUGGaCGc -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 185504 | 0.71 | 0.439812 |
Target: 5'- -aCG-CCGGGCuGCgCGgGGGCCUGCc -3' miRNA: 3'- aaGCuGGCCCG-CGaGCgCCUGGACGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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