Results 1 - 20 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9198 | 3' | -62.9 | NC_002512.2 | + | 142068 | 0.66 | 0.725801 |
Target: 5'- -cCGGCCGGGggauCGCUCGgGGgugcaACCgaacGCGg -3' miRNA: 3'- aaGCUGGCCC----GCGAGCgCC-----UGGa---CGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 155787 | 0.66 | 0.69794 |
Target: 5'- -aCG-CCGGGCaGCUCGUGc-CCUGCc -3' miRNA: 3'- aaGCuGGCCCG-CGAGCGCcuGGACGc -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 228412 | 0.66 | 0.69794 |
Target: 5'- --gGACgGGGCGCUgGgGGGCggggGCGg -3' miRNA: 3'- aagCUGgCCCGCGAgCgCCUGga--CGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 221908 | 0.66 | 0.69794 |
Target: 5'- --gGAUCGGGCGCcagCGCGcgauGGCCUgguGCGg -3' miRNA: 3'- aagCUGGCCCGCGa--GCGC----CUGGA---CGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 204743 | 0.66 | 0.69794 |
Target: 5'- --gGAcCCGGGUGCUCaGCGaucccGGCCUGgGg -3' miRNA: 3'- aagCU-GGCCCGCGAG-CGC-----CUGGACgC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 132102 | 0.66 | 0.69794 |
Target: 5'- cUCgGACCGGG-GCUCGaGGGCC-GCc -3' miRNA: 3'- aAG-CUGGCCCgCGAGCgCCUGGaCGc -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 92125 | 0.66 | 0.69794 |
Target: 5'- --aGACCGcGGacaCGCU-GCGGGCgCUGCGg -3' miRNA: 3'- aagCUGGC-CC---GCGAgCGCCUG-GACGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 143554 | 0.66 | 0.697002 |
Target: 5'- -gCGGCCGcGCGuCUCcccgcggGCGGGCCgGCGg -3' miRNA: 3'- aaGCUGGCcCGC-GAG-------CGCCUGGaCGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 77529 | 0.66 | 0.688547 |
Target: 5'- gUCGAUCGGGaccggagaCGCcuacgUCGCGGACg-GCGg -3' miRNA: 3'- aAGCUGGCCC--------GCG-----AGCGCCUGgaCGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 221158 | 0.66 | 0.69794 |
Target: 5'- gUCGACgggCGGGCGCgCGCGG-CCgacCGa -3' miRNA: 3'- aAGCUG---GCCCGCGaGCGCCuGGac-GC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 196753 | 0.66 | 0.707284 |
Target: 5'- cUCGACCGgcGGCGUguacUGCuacGACCUGCa -3' miRNA: 3'- aAGCUGGC--CCGCGa---GCGc--CUGGACGc -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 90940 | 0.66 | 0.716574 |
Target: 5'- -gCGACCgGGGCGUgCGUGGGC--GCGa -3' miRNA: 3'- aaGCUGG-CCCGCGaGCGCCUGgaCGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 122120 | 0.66 | 0.725801 |
Target: 5'- gUCGGCC--GCGCUggacagCGUGGACgUGCGg -3' miRNA: 3'- aAGCUGGccCGCGA------GCGCCUGgACGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 121066 | 0.66 | 0.725801 |
Target: 5'- -cCGcCCGaGGCGCggaggaaGCGGACCcacGCGg -3' miRNA: 3'- aaGCuGGC-CCGCGag-----CGCCUGGa--CGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 214407 | 0.66 | 0.725801 |
Target: 5'- cUUCgGGCCGGaGCGCgccgCGCccgaGGACC-GCGu -3' miRNA: 3'- -AAG-CUGGCC-CGCGa---GCG----CCUGGaCGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 161504 | 0.66 | 0.725801 |
Target: 5'- --gGACCuGGuGCGCUgCGCGGACg-GCa -3' miRNA: 3'- aagCUGG-CC-CGCGA-GCGCCUGgaCGc -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 92636 | 0.66 | 0.725801 |
Target: 5'- -gCGGCCGccGGCGC-CG-GGACCcGCGc -3' miRNA: 3'- aaGCUGGC--CCGCGaGCgCCUGGaCGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 227195 | 0.66 | 0.716574 |
Target: 5'- -gCGGCa-GGCGCUcccgcgCGCGGACCaggagGCGg -3' miRNA: 3'- aaGCUGgcCCGCGA------GCGCCUGGa----CGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 180550 | 0.66 | 0.716574 |
Target: 5'- gUCGAUC-GGCGCUUGCGGcgggcuCCgGUGg -3' miRNA: 3'- aAGCUGGcCCGCGAGCGCCu-----GGaCGC- -5' |
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9198 | 3' | -62.9 | NC_002512.2 | + | 227425 | 0.66 | 0.716574 |
Target: 5'- cUCGcGCgCGGGCGCgggcCGCGGucACCUucGCGc -3' miRNA: 3'- aAGC-UG-GCCCGCGa---GCGCC--UGGA--CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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