miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9198 3' -62.9 NC_002512.2 + 2817 0.69 0.537265
Target:  5'- --gGACCcGGCGCgggCGCGGGCCcggacgacgGCGg -3'
miRNA:   3'- aagCUGGcCCGCGa--GCGCCUGGa--------CGC- -5'
9198 3' -62.9 NC_002512.2 + 5866 0.67 0.644926
Target:  5'- gUCGGagucCCGGGCgucguccgacucgucGCUCGUGGACg-GCGg -3'
miRNA:   3'- aAGCU----GGCCCG---------------CGAGCGCCUGgaCGC- -5'
9198 3' -62.9 NC_002512.2 + 6340 0.74 0.267387
Target:  5'- --gGACCGGGCGCggggccgGCGGGCC-GCGg -3'
miRNA:   3'- aagCUGGCCCGCGag-----CGCCUGGaCGC- -5'
9198 3' -62.9 NC_002512.2 + 8157 0.7 0.474165
Target:  5'- gUCcGCCaGGCGCUCGgGGAUCUcgGCGu -3'
miRNA:   3'- aAGcUGGcCCGCGAGCgCCUGGA--CGC- -5'
9198 3' -62.9 NC_002512.2 + 9674 0.66 0.707284
Target:  5'- cUCGucccCCGGGcCGC-CGuCGGGCCccgGCGg -3'
miRNA:   3'- aAGCu---GGCCC-GCGaGC-GCCUGGa--CGC- -5'
9198 3' -62.9 NC_002512.2 + 10111 0.67 0.650641
Target:  5'- -cCGGCCGGGCcgGC-CGCGGGCaaauaUGUu -3'
miRNA:   3'- aaGCUGGCCCG--CGaGCGCCUGg----ACGc -5'
9198 3' -62.9 NC_002512.2 + 12925 0.67 0.650641
Target:  5'- -gCGcCCGGGCGUUcCGCGcGAagaaCCUGCu -3'
miRNA:   3'- aaGCuGGCCCGCGA-GCGC-CU----GGACGc -5'
9198 3' -62.9 NC_002512.2 + 13144 1.05 0.002147
Target:  5'- gUUCGACCGGGCGCUCGCGGACCUGCGc -3'
miRNA:   3'- -AAGCUGGCCCGCGAGCGCCUGGACGC- -5'
9198 3' -62.9 NC_002512.2 + 13362 0.74 0.291863
Target:  5'- -aCGACuCGGGCGCguUCGUGGugCcGCGg -3'
miRNA:   3'- aaGCUG-GCCCGCG--AGCGCCugGaCGC- -5'
9198 3' -62.9 NC_002512.2 + 18142 0.7 0.448269
Target:  5'- -gCGcCCGGGcCGCgUCGCGGGCCagGCc -3'
miRNA:   3'- aaGCuGGCCC-GCG-AGCGCCUGGa-CGc -5'
9198 3' -62.9 NC_002512.2 + 19392 0.68 0.593522
Target:  5'- -gCG-UCGGGCccucgcCUCGCGGAUCUGCu -3'
miRNA:   3'- aaGCuGGCCCGc-----GAGCGCCUGGACGc -5'
9198 3' -62.9 NC_002512.2 + 25940 0.67 0.63063
Target:  5'- gUCGGCCGGGgGCcaCGaGGGCCUcguaguaGCGg -3'
miRNA:   3'- aAGCUGGCCCgCGa-GCgCCUGGA-------CGC- -5'
9198 3' -62.9 NC_002512.2 + 29902 0.68 0.565211
Target:  5'- cUCGuccccGCCGGGCGC--GCGGACgCgGCGg -3'
miRNA:   3'- aAGC-----UGGCCCGCGagCGCCUG-GaCGC- -5'
9198 3' -62.9 NC_002512.2 + 30420 0.69 0.510718
Target:  5'- --gGACgCGGGCGUcgucgcggcccugaaCGCGGGCCUGCc -3'
miRNA:   3'- aagCUG-GCCCGCGa--------------GCGCCUGGACGc -5'
9198 3' -62.9 NC_002512.2 + 30776 0.68 0.612527
Target:  5'- -aCGACCugcugcagaGGGUGaaCGUGGACCUGgCGg -3'
miRNA:   3'- aaGCUGG---------CCCGCgaGCGCCUGGAC-GC- -5'
9198 3' -62.9 NC_002512.2 + 31244 0.66 0.69794
Target:  5'- uUUCGugaGGGCGCUgauggaCGCGGACgUGUa -3'
miRNA:   3'- -AAGCuggCCCGCGA------GCGCCUGgACGc -5'
9198 3' -62.9 NC_002512.2 + 31685 0.67 0.660153
Target:  5'- --gGACgGGGaggaGgaCGCGGACCUGUu -3'
miRNA:   3'- aagCUGgCCCg---CgaGCGCCUGGACGc -5'
9198 3' -62.9 NC_002512.2 + 32566 0.66 0.716574
Target:  5'- -cCG-CCGGGCGC-CGCGGguGCCgggGUc -3'
miRNA:   3'- aaGCuGGCCCGCGaGCGCC--UGGa--CGc -5'
9198 3' -62.9 NC_002512.2 + 33737 0.67 0.641115
Target:  5'- gUCGACCGGaGCGaggaGCGGcCCUGg- -3'
miRNA:   3'- aAGCUGGCC-CGCgag-CGCCuGGACgc -5'
9198 3' -62.9 NC_002512.2 + 34826 0.68 0.565211
Target:  5'- -cCGACCGGacgacccuccCGCcCGCGGGCCgcgGCGg -3'
miRNA:   3'- aaGCUGGCCc---------GCGaGCGCCUGGa--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.