miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9198 3' -62.9 NC_002512.2 + 13144 1.05 0.002147
Target:  5'- gUUCGACCGGGCGCUCGCGGACCUGCGc -3'
miRNA:   3'- -AAGCUGGCCCGCGAGCGCCUGGACGC- -5'
9198 3' -62.9 NC_002512.2 + 139141 0.69 0.509812
Target:  5'- cUCGGCCGGGuCGUUCGCcaaGGACUgGUu -3'
miRNA:   3'- aAGCUGGCCC-GCGAGCG---CCUGGaCGc -5'
9198 3' -62.9 NC_002512.2 + 45196 0.69 0.518901
Target:  5'- cUCGACCGGGaccgGCggCGCGGACg-GCc -3'
miRNA:   3'- aAGCUGGCCCg---CGa-GCGCCUGgaCGc -5'
9198 3' -62.9 NC_002512.2 + 142068 0.66 0.725801
Target:  5'- -cCGGCCGGGggauCGCUCGgGGgugcaACCgaacGCGg -3'
miRNA:   3'- aaGCUGGCCC----GCGAGCgCC-----UGGa---CGC- -5'
9198 3' -62.9 NC_002512.2 + 6340 0.74 0.267387
Target:  5'- --gGACCGGGCGCggggccgGCGGGCC-GCGg -3'
miRNA:   3'- aagCUGGCCCGCGag-----CGCCUGGaCGC- -5'
9198 3' -62.9 NC_002512.2 + 13362 0.74 0.291863
Target:  5'- -aCGACuCGGGCGCguUCGUGGugCcGCGg -3'
miRNA:   3'- aaGCUG-GCCCGCG--AGCGCCugGaCGC- -5'
9198 3' -62.9 NC_002512.2 + 81280 0.73 0.338837
Target:  5'- -aCGGCagggGGGCGgUC-CGGGCCUGCGg -3'
miRNA:   3'- aaGCUGg---CCCGCgAGcGCCUGGACGC- -5'
9198 3' -62.9 NC_002512.2 + 89299 0.72 0.380975
Target:  5'- aUCGACgGGGCGUUCGCGacgugggacaugacGACCUuCGa -3'
miRNA:   3'- aAGCUGgCCCGCGAGCGC--------------CUGGAcGC- -5'
9198 3' -62.9 NC_002512.2 + 42571 0.71 0.439812
Target:  5'- -aCGGgCGGGCGC-CGCGaGGCgaGCGg -3'
miRNA:   3'- aaGCUgGCCCGCGaGCGC-CUGgaCGC- -5'
9198 3' -62.9 NC_002512.2 + 79213 0.69 0.509812
Target:  5'- -gCGACCGccGCGCcCGCGGACCU-CGa -3'
miRNA:   3'- aaGCUGGCc-CGCGaGCGCCUGGAcGC- -5'
9198 3' -62.9 NC_002512.2 + 18142 0.7 0.448269
Target:  5'- -gCGcCCGGGcCGCgUCGCGGGCCagGCc -3'
miRNA:   3'- aaGCuGGCCC-GCG-AGCGCCUGGa-CGc -5'
9198 3' -62.9 NC_002512.2 + 129380 0.71 0.406921
Target:  5'- cUCGugCGGGUGCUCGaCG-ACC-GCGg -3'
miRNA:   3'- aAGCugGCCCGCGAGC-GCcUGGaCGC- -5'
9198 3' -62.9 NC_002512.2 + 128294 0.77 0.185792
Target:  5'- cUCGugCGGGUGCacgcccgagUCGCGGcACCUGCu -3'
miRNA:   3'- aAGCugGCCCGCG---------AGCGCC-UGGACGc -5'
9198 3' -62.9 NC_002512.2 + 8157 0.7 0.474165
Target:  5'- gUCcGCCaGGCGCUCGgGGAUCUcgGCGu -3'
miRNA:   3'- aAGcUGGcCCGCGAGCgCCUGGA--CGC- -5'
9198 3' -62.9 NC_002512.2 + 45409 0.76 0.199209
Target:  5'- cUCGugCGGGCGCUCGaCGGcggcgccgGCCgcgGCGa -3'
miRNA:   3'- aAGCugGCCCGCGAGC-GCC--------UGGa--CGC- -5'
9198 3' -62.9 NC_002512.2 + 124357 0.71 0.398149
Target:  5'- gUCGGCCGGGCaGUUCGgcugccaCGGcguCCUGCGc -3'
miRNA:   3'- aAGCUGGCCCG-CGAGC-------GCCu--GGACGC- -5'
9198 3' -62.9 NC_002512.2 + 41785 0.7 0.479435
Target:  5'- gUCGACgCGGGCGaccgaguugccguuCUCGCGGACgacgauguccuggCUGUGg -3'
miRNA:   3'- aAGCUG-GCCCGC--------------GAGCGCCUG-------------GACGC- -5'
9198 3' -62.9 NC_002512.2 + 30420 0.69 0.510718
Target:  5'- --gGACgCGGGCGUcgucgcggcccugaaCGCGGGCCUGCc -3'
miRNA:   3'- aagCUG-GCCCGCGa--------------GCGCCUGGACGc -5'
9198 3' -62.9 NC_002512.2 + 86112 0.75 0.261534
Target:  5'- aUgGAcCCGGGCGCggaggaggUCGCGGACCUGg- -3'
miRNA:   3'- aAgCU-GGCCCGCG--------AGCGCCUGGACgc -5'
9198 3' -62.9 NC_002512.2 + 47297 0.73 0.311346
Target:  5'- -aCuGCCGGGCGaUCGCGGAgCUGCu -3'
miRNA:   3'- aaGcUGGCCCGCgAGCGCCUgGACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.