miRNA display CGI


Results 41 - 60 of 140 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 5' -55.1 NC_002512.2 + 82351 0.66 0.974006
Target:  5'- -gCGGUGgGCgUGCGGGGGCGG-CGGa -3'
miRNA:   3'- gaGCCGCgUGaGCGUUUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 82969 0.71 0.818214
Target:  5'- -gCGGCGCACggCGCGGAAGaC-GUCGGc -3'
miRNA:   3'- gaGCCGCGUGa-GCGUUUUC-GcCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 83937 0.72 0.746321
Target:  5'- -cCGGCGCAUgUCGCGc-AGCaGGUCGAa -3'
miRNA:   3'- gaGCCGCGUG-AGCGUuuUCG-CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 84431 0.67 0.951073
Target:  5'- cCUCGGUcUugUCGUuGAGGCGGagGAu -3'
miRNA:   3'- -GAGCCGcGugAGCGuUUUCGCCagCU- -5'
9205 5' -55.1 NC_002512.2 + 85284 0.66 0.965405
Target:  5'- -gCGGCGCGgacCUCGUgcGAGgGGaUCGAc -3'
miRNA:   3'- gaGCCGCGU---GAGCGuuUUCgCC-AGCU- -5'
9205 5' -55.1 NC_002512.2 + 85567 0.68 0.933232
Target:  5'- --aGGCGCGggaGCGGGAGCGGcCGGg -3'
miRNA:   3'- gagCCGCGUgagCGUUUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 86578 0.67 0.946525
Target:  5'- cCUUGGUccguccuuCGCUCGCcgcgauggucgggGGGAGCGGUCGGu -3'
miRNA:   3'- -GAGCCGc-------GUGAGCG-------------UUUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 87134 0.66 0.976494
Target:  5'- -gCGGCGCACgaGCuggacAAGGCGGgcaacgCGAa -3'
miRNA:   3'- gaGCCGCGUGagCGu----UUUCGCCa-----GCU- -5'
9205 5' -55.1 NC_002512.2 + 88883 0.67 0.954977
Target:  5'- gUCGGuCGCcguccUUCGCGAucGCGGUCc- -3'
miRNA:   3'- gAGCC-GCGu----GAGCGUUuuCGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 89767 0.67 0.942156
Target:  5'- gUCGGCGCGCggGCAucugacaucggggAGAGCGucGUCGu -3'
miRNA:   3'- gAGCCGCGUGagCGU-------------UUUCGC--CAGCu -5'
9205 5' -55.1 NC_002512.2 + 91920 0.68 0.928205
Target:  5'- -gCGGCGCGC-CGUc--GGCGGcCGAc -3'
miRNA:   3'- gaGCCGCGUGaGCGuuuUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 91949 0.66 0.965405
Target:  5'- uUgGGCGCGaUCGCcAGGGCGGagCGGc -3'
miRNA:   3'- gAgCCGCGUgAGCGuUUUCGCCa-GCU- -5'
9205 5' -55.1 NC_002512.2 + 92015 0.69 0.893278
Target:  5'- -gCGGCGgACUCGCG--GGC-GUCGGg -3'
miRNA:   3'- gaGCCGCgUGAGCGUuuUCGcCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 94506 0.66 0.976253
Target:  5'- gUCgGGCGCGuCUucgaaccCGCccaggacGAAGCGGUCGAc -3'
miRNA:   3'- gAG-CCGCGU-GA-------GCGu------UUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 95957 0.66 0.975767
Target:  5'- -gCGGgGgGCUgaggcccggguuggCGCAGcGGCGGUCGGc -3'
miRNA:   3'- gaGCCgCgUGA--------------GCGUUuUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 96303 0.71 0.818214
Target:  5'- -cCGGCcCGCUCGgGuccccGGCGGUCGAu -3'
miRNA:   3'- gaGCCGcGUGAGCgUuu---UCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 97354 0.66 0.974006
Target:  5'- -aCGGCGcCGCcCGCGGAgcggggaccgcGGCGGcCGGa -3'
miRNA:   3'- gaGCCGC-GUGaGCGUUU-----------UCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 99085 0.66 0.962139
Target:  5'- cCUCGGC-CAC-CGCGugcuGCGcGUCGGc -3'
miRNA:   3'- -GAGCCGcGUGaGCGUuuu-CGC-CAGCU- -5'
9205 5' -55.1 NC_002512.2 + 99932 0.7 0.842731
Target:  5'- aUCGcGuCGCAgaCGCAGAAGaGGUCGAa -3'
miRNA:   3'- gAGC-C-GCGUgaGCGUUUUCgCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 101122 0.69 0.90582
Target:  5'- -gCGGCGUgcGCUCGCGc-AGCGcGUCGu -3'
miRNA:   3'- gaGCCGCG--UGAGCGUuuUCGC-CAGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.